| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,980,605 – 14,980,676 |
| Length | 71 |
| Max. P | 0.993524 |
| Location | 14,980,605 – 14,980,676 |
|---|---|
| Length | 71 |
| Sequences | 7 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 57.17 |
| Shannon entropy | 0.85650 |
| G+C content | 0.44300 |
| Mean single sequence MFE | -20.04 |
| Consensus MFE | -7.97 |
| Energy contribution | -7.23 |
| Covariance contribution | -0.74 |
| Combinations/Pair | 2.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.62 |
| SVM RNA-class probability | 0.993524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14980605 71 - 21146708 GGGUCACUCGAGCCAUUGCAUCCCAGGAAGGAUGCU-UAAUCUUAUCAUGGGGUAGUAAUGUAAUAGUGUAA ....((((.....((((((((((((.(((((((...-..))))).)).)))))).))))))....))))... ( -21.40, z-score = -1.92, R) >droEre2.scaffold_4845 9178461 70 - 22589142 GGGUCACUCGAGGCAUUGCAUCCCGGGAAGGG--UUAUAAUCCUAUCAUGGGGUAGUAAUGCAGUGGUGUAA ....(((.((..(((((((((((((.((((((--(....))))).)).)))))).)))))))..)))))... ( -27.70, z-score = -3.59, R) >droYak2.chr2R 6938018 72 + 21139217 GGGUCACUCGAGGCAUUGCAUCCCGGGAAGGAUUUUAUAAUCCUAUCAUGGGGUGUUAGUGUAAUGGUGCAA ..(.(((.((..(((((((((((((.((((((((....)))))).)).))))))).))))))..)))))).. ( -27.50, z-score = -3.41, R) >droSec1.super_1 12486666 71 - 14215200 GGGUCACUCGAGCCAUUGCAUCCCAGGAAGGAUCCU-UAAUCUUAUCCCAGGGUAGUAGUGUAAUAGUGUAA ....((((.....((((((((((..((((((((...-..))))).)))..)))).))))))....))))... ( -18.10, z-score = -0.72, R) >droSim1.chr2R 13681745 71 - 19596830 GGGUCACUCAAGCCGUUGCAUCCCAGAAAGGAUCCU-UAAUCUUAUCAUGGGGUAGUAGUUUAAUAGUGUAA ....((((.((((..((((..((((((.(((((...-..))))).)).))))))))..))))...))))... ( -17.30, z-score = -1.31, R) >droMoj3.scaffold_6496 20396518 65 + 26866924 UAUUUCUUGGUGUUGCUGCCUGUUGAGGGUGACGCUUAAAGU----UGUCAGCUGAAGCGAAAGCCAAA--- ......(((((.(((((....(((((.(....)((.....))----..)))))...)))))..))))).--- ( -16.10, z-score = -0.20, R) >droGri2.scaffold_15245 18097450 67 - 18325388 --GUUUUCAUUGUGGCUGUUCGUCGAGGAUGCUGCAAAAAGUUUGCUUUCAAGUAAUACAAUAAAAAAA--- --.......(((..((.((((.....))))))..)))...(((((((....))))).))..........--- ( -12.20, z-score = -0.70, R) >consensus GGGUCACUCGAGCCAUUGCAUCCCGGGAAGGAUGCU_UAAUCUUAUCAUGGGGUAGUAGUGUAAUAGUGUAA ....((((.....((((((..(((.((.(((((......))))).))...)))..))))))....))))... ( -7.97 = -7.23 + -0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:55 2011