| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,961,271 – 14,961,321 |
| Length | 50 |
| Max. P | 0.978637 |
| Location | 14,961,271 – 14,961,321 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 96.00 |
| Shannon entropy | 0.06772 |
| G+C content | 0.34000 |
| Mean single sequence MFE | -13.60 |
| Consensus MFE | -12.56 |
| Energy contribution | -13.20 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.978637 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14961271 50 - 21146708 AAAAUUGGGCACGAUGCGAAGUGAAUUUAUUUAUGUCAUUUUGCAUCUGU ........(((.((((((((((((...........))))))))))))))) ( -15.60, z-score = -3.42, R) >droSim1.chr2R 13662330 50 - 19596830 AAAAUUGGGCACGAUGCGAAGUGAAUUUAUUUAUGUCAUUUUGCAUCUGU ........(((.((((((((((((...........))))))))))))))) ( -15.60, z-score = -3.42, R) >droSec1.super_1 12467589 50 - 14215200 AAAAUUGGGCACGAUGCGAAGUGAAUUUAUUUAUGUCAUUUUGCAUCUGU ........(((.((((((((((((...........))))))))))))))) ( -15.60, z-score = -3.42, R) >droYak2.chr2R 6917439 50 + 21139217 AAAAUUGGGCACGAAGUGAUGUGAAUUUAUUUAUGUCAUUUUGCAUCUGU ......(((..((((((((((((((....))))))))))))))..))).. ( -12.90, z-score = -2.51, R) >droEre2.scaffold_4845 9158748 50 - 22589142 GAAAUUGGGCACGAAGCGAUGUGAAUUUAUUUAUGUCAUUUUGCAUCUGU ......(((..(((((.((((((((....)))))))).)))))..))).. ( -8.30, z-score = -0.01, R) >consensus AAAAUUGGGCACGAUGCGAAGUGAAUUUAUUUAUGUCAUUUUGCAUCUGU ........(((.((((((((((((...........))))))))))))))) (-12.56 = -13.20 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:49 2011