| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,954,441 – 14,954,538 |
| Length | 97 |
| Max. P | 0.701430 |
| Location | 14,954,441 – 14,954,538 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 68.92 |
| Shannon entropy | 0.49940 |
| G+C content | 0.41921 |
| Mean single sequence MFE | -22.17 |
| Consensus MFE | -8.90 |
| Energy contribution | -9.78 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.701430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14954441 97 + 21146708 AGCCUAUCCCAACAACAAAAAUAUAAGAGCGCGCAUUUAGCGAAAAUAAAAGAGAGCAAACCCAAACUGCUUCUCUUUUACUUUCGUUUAAAGCAUA .((((....................)).))..((.((.(((((((.((((((((((((.........))).))))))))).))))))).)).))... ( -22.45, z-score = -4.18, R) >droSim1.chr2R 13654000 95 + 19596830 AGCCUAUCCCAACAACAAAU-UAUAAGAGCGCGCAUUUAGCGAAAAUAAGAGAGAGUAAACCCAGACUGCUUCUCUUUU-UUUUCGCUUAAAGCAUA .((((...............-....)).))..((.((.((((((((.(((((((((((.........))).))))))))-)))))))).)).))... ( -21.41, z-score = -2.70, R) >droSec1.super_1 12460914 95 + 14215200 AGCCUAUCCCAACAACAAAU-UAUAAGAGCGCGCAUUUGGGGAAAAUAAGAGAGAGUAAACCCAGGCUGUUUCUCUUUU-UUUUCGUUUAAAGCAUA .((((...............-....)).))((.....((..(((((..(((((.(((........))).)))))..)))-))..))......))... ( -17.71, z-score = -0.04, R) >droEre2.scaffold_4845 9151990 86 + 22589142 AGCCUAUCCCAACAACUGAU--AAGGCGGCUAAGAGAGCGGGAGACUUACGAGCGGCAGAGCGAAA--GUCUCCACUGG------GCUAAGAGAGC- .(((((((.........)))--.)))).(((.....(((.((((((((.((..(....)..)).))--)))))).....------))).....)))- ( -27.10, z-score = -0.92, R) >consensus AGCCUAUCCCAACAACAAAU_UAUAAGAGCGCGCAUUUAGCGAAAAUAAGAGAGAGCAAACCCAAACUGCUUCUCUUUU_UUUUCGCUUAAAGCAUA ..............................((......((((((((.(((((((((((.........)))).))))))).))))))))....))... ( -8.90 = -9.78 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:46 2011