| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,939,643 – 14,939,734 |
| Length | 91 |
| Max. P | 0.537500 |
| Location | 14,939,643 – 14,939,734 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 96.48 |
| Shannon entropy | 0.06101 |
| G+C content | 0.31209 |
| Mean single sequence MFE | -16.62 |
| Consensus MFE | -14.93 |
| Energy contribution | -15.17 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537500 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14939643 91 + 21146708 GUUGCUCUCUGUUUACAUUGCAAAGUAAACAAAUGUUUCUGUUCUUGUCAGCGUUUCUUUUAAAUGUUUGCGAAUUUUCGAAUUUGUUUAA .((((....((....))..))))..(((((((((......((((..((.(((((((.....))))))).))))))......))))))))). ( -15.60, z-score = -1.31, R) >droEre2.scaffold_4845 9136386 91 + 22589142 AUUGCUCUCUGUUUACAUUGCAAGGUAAACAAAUGUUUCUGUAUUCGUCAGCGUUUCUUUUAAAUGUUUGCGAAUUUUCGAAUUUGUUGAA .((((....((....))..))))....(((((((........((((((.(((((((.....))))))).))))))......)))))))... ( -17.24, z-score = -1.27, R) >droYak2.chr2R 6895037 91 - 21139217 AUUGCUCUCUGUUUACAUUGCAAAGUAAACAAAUGUUUCUGUAUUCGUCAGCGUUUCUUUUAAAUGUUUGCGAAUUUUCGAAUUUGUUGAA .((((....((....))..))))....(((((((........((((((.(((((((.....))))))).))))))......)))))))... ( -17.24, z-score = -1.49, R) >droSec1.super_1 12446026 91 + 14215200 AUUGCUCUCUGUUUACAUUGCAAAGUAAACAAAUGUUUCUGUACUCGUCAGCGUUUCUUUUAAAUGUUUGCGAAUUUUCGAAUUUGUUUAA .((((....((....))..))))..(((((((((..........((((.(((((((.....))))))).))))........))))))))). ( -16.47, z-score = -1.63, R) >droSim1.chr2R 13639052 91 + 19596830 AUUGCUCUCUGUUUACAUUGCAAAGUAAACAAAUGUUUCUGUACUCGUCAGCGUUUCUUUCAAAUGUUUGCGAAUUUUCGAAUUUGUUUAA .((((....((....))..))))..(((((((((..........((((.(((((((.....))))))).))))........))))))))). ( -16.57, z-score = -1.57, R) >consensus AUUGCUCUCUGUUUACAUUGCAAAGUAAACAAAUGUUUCUGUACUCGUCAGCGUUUCUUUUAAAUGUUUGCGAAUUUUCGAAUUUGUUUAA .((((....((....))..))))..(((((((((..........((((.(((((((.....))))))).))))........))))))))). (-14.93 = -15.17 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:40 2011