| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,932,891 – 14,932,983 |
| Length | 92 |
| Max. P | 0.776441 |
| Location | 14,932,891 – 14,932,983 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 81.66 |
| Shannon entropy | 0.35713 |
| G+C content | 0.48109 |
| Mean single sequence MFE | -27.88 |
| Consensus MFE | -20.57 |
| Energy contribution | -22.48 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.776441 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14932891 92 + 21146708 UACCGUUGCGAAACAUCCUUCUGGU-GAUUGCGAUUAUUCGGAUAAUGCCAGCGAGCUGUGGGAUAUUCACCACAAAGCAGCGGCAAUCAGCA ..(((((((........((((((((-(..(.(((....))).)...)))))).))).(((((........)))))..)))))))......... ( -29.20, z-score = -1.63, R) >droSim1.chr2R 13632306 92 + 19596830 UACCGUUGCGAAGCAUCCUUCUGGU-GAUUGCGAUUAUUCGGAUAAUGCCAGCGAGCUGUGGGAUAUCCACCACAAAGCAGCGGCAAUCAGCA ..(((((((..(((.((...(((((-(..(.(((....))).)...)))))).)))))((((........))))...)))))))......... ( -30.60, z-score = -1.51, R) >droSec1.super_1 12439311 92 + 14215200 UACCGUUGCGAAGCAUCCUUCUGGU-GAUUGCGAUUAUUCGGAUAAUGCCAGCGAGCUGUGGGAUAUCCACCACAAAGCAGCGGCAAUCAGCA ..(((((((..(((.((...(((((-(..(.(((....))).)...)))))).)))))((((........))))...)))))))......... ( -30.60, z-score = -1.51, R) >droYak2.chr2R 6887905 92 - 21139217 UACCGUUGCAAAGCAUGCUUCUGGU-GAUUGCGAUUAUUCGGAUAAUGCCAGAGAGUUGUGGGAUAUCCACCACAAAGCAGCGGCAAUCAGCA ..(((((((.........(((((((-(..(.(((....))).)...))))))))..((((((........)))))).)))))))......... ( -31.80, z-score = -2.45, R) >droEre2.scaffold_4845 9129494 93 + 22589142 UACCGUUGCAAAGCAUCCUUCUGGUUGAUUGCGAUUAUUCGGAUAAUGCCAGCGAGCUGUGGGAUAUCCACCACAAAGCAGCGGCAAUCAGCA ..(((((((..(((.((...(((((....(.(((....))).)....))))).)))))((((........))))...)))))))......... ( -31.60, z-score = -2.04, R) >droWil1.scaffold_180697 2563670 72 + 4168966 -----UUUCUUUGGCUCAUUGCCAC----UGCAAUUAUUUGGAUAAUGC-----AACAUGGAGAU----GCCACAAAGCAGCAAUCAUCA--- -----...(((((...(((..(((.----((((.((((....)))))))-----)...)))..))----)...)))))............--- ( -13.50, z-score = 0.59, R) >consensus UACCGUUGCGAAGCAUCCUUCUGGU_GAUUGCGAUUAUUCGGAUAAUGCCAGCGAGCUGUGGGAUAUCCACCACAAAGCAGCGGCAAUCAGCA ..(((((((........((((((((....(.(((....))).)....))))).))).(((((........)))))..)))))))......... (-20.57 = -22.48 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:39 2011