| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,916,310 – 14,916,405 |
| Length | 95 |
| Max. P | 0.829476 |
| Location | 14,916,310 – 14,916,405 |
|---|---|
| Length | 95 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 83.14 |
| Shannon entropy | 0.30660 |
| G+C content | 0.46514 |
| Mean single sequence MFE | -29.91 |
| Consensus MFE | -24.12 |
| Energy contribution | -23.68 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14916310 95 + 21146708 UGGGUGAGAUUGCCAUUCAGCUCGAUGAAGAGGCUCUCGUUGAGCAAAAUGGCUGGCAGUUCUAUUUCCAAAAUGCUCGCUGGGACAUCGUCAUC------------------------ (.((((((...((((((..(((((((((........)))))))))..))))))(((.((......))))).....)))))).)(((...)))...------------------------ ( -30.30, z-score = -1.06, R) >droSim1.chr2R 13615993 95 + 19596830 UGGGUGAGAUUGCCAUUCAGCUCGAUGAAGAGGCUCUCGUUGAGCAAAAUGGCUGGCAGUUCUAUUUCCAAAAUGCUCGCUGGGACAUCGUCAUC------------------------ (.((((((...((((((..(((((((((........)))))))))..))))))(((.((......))))).....)))))).)(((...)))...------------------------ ( -30.30, z-score = -1.06, R) >droSec1.super_1 12423155 95 + 14215200 UGGGUGAGAUUGCCAUUCAGCUCGAUGAAGAGGCUCUCGUUGAGCAAAAUGGCUGGCAGUUCUAUUUCCAAAAUGCUCGCUGGGACAUCGUCAUC------------------------ (.((((((...((((((..(((((((((........)))))))))..))))))(((.((......))))).....)))))).)(((...)))...------------------------ ( -30.30, z-score = -1.06, R) >droYak2.chr2R 6871184 95 - 21139217 UGGGUGAGAUUGCCAUUCAGCUCGAUGAAGAGGCUCUCGUUGAGCAAAAUGGCUGGCAGUUCUAUUUCCAAAAUGCUCGCUGGGACAUCGUCAUC------------------------ (.((((((...((((((..(((((((((........)))))))))..))))))(((.((......))))).....)))))).)(((...)))...------------------------ ( -30.30, z-score = -1.06, R) >droEre2.scaffold_4845 9113371 95 + 22589142 UGGGUGAGAUUGCCAUUCAGCUCGAUGAAGAGGCUCUCGUUGAGCAAAAUGGCUGGCAGUUCUAUUUCCAAAAUGCUCGCUGGCACAUCGUCAUC------------------------ ..((((((((((((.....(((((((((........))))))))).....(((.((((...............)))).))))))).))).)))))------------------------ ( -31.36, z-score = -1.37, R) >droAna3.scaffold_13266 2482971 119 - 19884421 UGGGUGAGAUUGCCAUUCAGCUCGAUGAAGAGGCUGUCGUUGAGCAAAAUGGCUGGCAGUUCUAUUUCCAAAAUGCUCGCUGGGACGUCGACAUCCAUAUCCACAUCCACAUCCAGAUU ((((((.....((((((..(((((((((........)))))))))..)))))).((((((..............))).))).(((.((.((........)).)).))).)))))).... ( -35.24, z-score = -0.54, R) >droWil1.scaffold_180697 2535719 95 + 4168966 UGUGUUACAUUGCCAUUUAGCUCAAUAAAGAGACUCUCGUUGAGAAGAAUGGCAGGCAGUUCUAUUUCCAAAACGCUUGGAAAAUCAUCGCCAUU------------------------ ..........((((((((..((((((...(((...)))))))))..))))))))(((.((....(((((((.....)))))))...)).)))...------------------------ ( -28.20, z-score = -3.08, R) >droVir3.scaffold_12875 1059385 93 - 20611582 UGGGUCAGGCUGCCAUUCAGUUCAAUGAAGAGGCUCUCAUUGAACAAUAUUGCUGGCAGUUCUAUUUCCAAAAUGCU---UGGAACAUCACCAAUU----------------------- (((....((((((((..(((((((((((........))))))))).....)).))))))))....((((((.....)---))))).....)))...----------------------- ( -27.10, z-score = -1.88, R) >droMoj3.scaffold_6496 20281292 93 - 26866924 UGGGUUAGGCUGCCAUUCAGUUCAAUGAAGAGGCUCUCGUUGAACAAUAUGGCUGGCAGUUCUAUUUCCAAAAUGCU---UGGGACAUCACCAAUU----------------------- ((((.((((((((((..(((((((((((........)))))))))....))..)))))).))))..))))......(---(((.......))))..----------------------- ( -30.60, z-score = -2.50, R) >droGri2.scaffold_15245 17997085 93 + 18325388 UGCGUGAGGCUGCCAUUCAGUUCAAUGAAGAGACUCUCGUUGAACAAUAUUGCUGGCAGUUCUAUUUCCAAAAUGCU---UGGCACAUCACCAAUU----------------------- ((.((((...(((((..(((((((((((........)))))))))...((((....)))).............))..---)))))..))))))...----------------------- ( -25.40, z-score = -1.43, R) >consensus UGGGUGAGAUUGCCAUUCAGCUCGAUGAAGAGGCUCUCGUUGAGCAAAAUGGCUGGCAGUUCUAUUUCCAAAAUGCUCGCUGGGACAUCGUCAUC________________________ ((((..(((((((((.((((((((((((........)))))))))....))).)))))).)))...))))................................................. (-24.12 = -23.68 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:37 2011