| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,912,637 – 14,912,731 |
| Length | 94 |
| Max. P | 0.914094 |
| Location | 14,912,637 – 14,912,731 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 67.09 |
| Shannon entropy | 0.50015 |
| G+C content | 0.32414 |
| Mean single sequence MFE | -16.66 |
| Consensus MFE | -12.86 |
| Energy contribution | -12.30 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14912637 94 + 21146708 GCAUUAUGCGAAAUUCUCGACGUUCCUUUGGGCUUAGCUGUUCUAGGUACACUGAGAAAAGUGAUGAAAUGAAAAACUUAAAAAUAUAUAUUUC-------------------- .((((((......((((((..((.(((..((((......)))).))).))..))))))..))))))............................-------------------- ( -16.20, z-score = -0.59, R) >droSim1.chr2R 13611919 76 + 19596830 GCAUUAUGCGAAAUUCUCAACGUUCCUUUGGGCUUAGUUGUUCUAGGUACACUGAGAAUAUU-AUAAUAUAUAUUUC------------------------------------- ((.....))...(((((((..((.(((..((((......)))).))).))..)))))))...-..............------------------------------------- ( -16.20, z-score = -2.14, R) >droSec1.super_1 12419116 94 + 14215200 GCAUUAUGCGAAAUUCUCGACGUUCCUUUGGGCUUAGUUGUUCUAGGUACACUGAGAGAAGUGAUGAAAUGAAAAACUUAAAAAUGCAUAUUUC-------------------- ....((((((...((((((..((.(((..((((......)))).))).))..))))))((((.............)))).....))))))....-------------------- ( -18.92, z-score = -0.76, R) >droYak2.chr2R 6867299 113 - 21139217 GCAUUAUGCGAAAUUCUCAUCGUUCUUUUGGGUUUAGUUGUUCUAGGUACACUGACAAAAAU-AUAAGAAAUUUCUUUUGGAAACAAAAUCUAAAACUUAAAAAAAAAUAUUAC .......((((........))))..((((((((((..(((((..((.....)))))))....-............(((((....)))))....))))))))))........... ( -15.30, z-score = -0.65, R) >consensus GCAUUAUGCGAAAUUCUCAACGUUCCUUUGGGCUUAGUUGUUCUAGGUACACUGAGAAAAGU_AUAAAAUAAAAAACUUAAAAAUA_AUAUUUC____________________ ((.....))....((((((..((.(((..(..(......)..).))).))..))))))........................................................ (-12.86 = -12.30 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:36 2011