| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,903,413 – 14,903,482 |
| Length | 69 |
| Max. P | 0.889975 |
| Location | 14,903,413 – 14,903,482 |
|---|---|
| Length | 69 |
| Sequences | 7 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 74.91 |
| Shannon entropy | 0.47492 |
| G+C content | 0.49800 |
| Mean single sequence MFE | -19.01 |
| Consensus MFE | -7.74 |
| Energy contribution | -8.07 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14903413 69 + 21146708 ------UACUUGUUACUCUUGUUAGCCGACUACGUUGGCCAUUAGUCACUUCAUUAACAUGGC-AAGCAGU-CGCUG ------.....((.((((((((((((((((...))))))..(((((......)))))..))))-))).)))-.)).. ( -16.10, z-score = -1.19, R) >droPer1.super_2 6179200 65 + 9036312 -----------CUUGACACCCGAAGUUCGCUUUGGCAGCCAUUAGUCACUUCAUUACCAUGGCACGGCCGU-GGCAG -----------..........(((((..(((.(((...)))..))).)))))....(((((((...)))))-))... ( -17.90, z-score = -1.09, R) >droAna3.scaffold_13266 2457281 76 - 19884421 CAUUCUGGCUGUUUGCCAUUUUGAGCUGCCCGUGCCGGCCAUUAGUCACUUCAUUAACAUGGC-CAGCACUUCUCUG ......(((.((((........)))).))).((((.((((((((((......))))..)))))-).))))....... ( -22.80, z-score = -2.24, R) >droEre2.scaffold_4845 9099790 66 + 22589142 ---------UACUUUCUCGUGUUAGCCGACUACGCUGCCCAUUAGUCACUUCAUUAACAUGGC-CAGCAGU-CGCUG ---------.............((((.((((..((((.((((((((......))))..)))).-)))))))-))))) ( -16.10, z-score = -1.91, R) >droYak2.chr2R 6849356 66 - 21139217 ---------UACUUCCGCGUGAUAGCCAACUACGCUGGCCAUUAGUCACUUCAUUAACAUGGC-CAGCAGU-CGCUG ---------.........(((((((....))..(((((((((((((......))))..)))))-)))).))-))).. ( -20.10, z-score = -2.64, R) >droSec1.super_1 12409801 66 + 14215200 ---------UACUUCCUCUUGUUAGCCGACUACGUUGGCCAUUAGUCACUUCAUUAACAUGGC-CAGCAGU-CGCUG ---------.............((((.((((..(((((((((((((......))))..)))))-)))))))-))))) ( -20.80, z-score = -3.87, R) >droSim1.chr2R 13602560 66 + 19596830 ---------UACUUCCUCUUGUUAGCCGACUACGUUGGCCAUUAGUCACUUCAUUAACAUGGC-CAGCAGU-CGUUG ---------.................(((((..(((((((((((((......))))..)))))-)))))))-))... ( -19.30, z-score = -3.49, R) >consensus _________UACUUCCUCUUGUUAGCCGACUACGCUGGCCAUUAGUCACUUCAUUAACAUGGC_CAGCAGU_CGCUG .................................(((((((((((((......))))..))))).))))......... ( -7.74 = -8.07 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:34 2011