| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,900,106 – 14,900,201 |
| Length | 95 |
| Max. P | 0.901027 |
| Location | 14,900,106 – 14,900,201 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 72.91 |
| Shannon entropy | 0.54275 |
| G+C content | 0.47659 |
| Mean single sequence MFE | -27.42 |
| Consensus MFE | -12.55 |
| Energy contribution | -11.99 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.901027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14900106 95 - 21146708 ---------UUGCUGGCCAUAAAAAGUCACUCAAGUGGUAUUAAAUGUACCACCAAGUGCAGUCGGCAUCGGGAAAUGGGAAAUGGCAAGUGGCAAAGGAAACU-- ---------(((((.(((((.....((..(((..(((((((.....)))))))...((((.....)))).)))..)).....)))))....)))))((....))-- ( -26.70, z-score = -1.72, R) >droPer1.super_2 6175153 106 - 9036312 UUGCUGGCCACGGUGGCCAUAAAAAGUCACUCAAGUGGUAUUAAAUGUACCACCAAGUGUAGUCAGCAUCGGGAAGUGGCAAGUGCCAGUUGAAGAGGGGGAUACC .((((((((((((((((........))))))...(((((((.....)))))))...)))..)))))))((...((.((((....)))).))...))((......)) ( -35.40, z-score = -2.07, R) >dp4.chr3 5974233 106 - 19779522 UUGCUGGCCACGGUGGCCAUAAAAAGUCACUCAAGUGGUAUUAAAUGUACCACCAAGUGUAGUCAGCAUCGGGAAGUGGCAAGUGCCAGUUGAAGAGGGGGAUACC .((((((((((((((((........))))))...(((((((.....)))))))...)))..)))))))((...((.((((....)))).))...))((......)) ( -35.40, z-score = -2.07, R) >droAna3.scaffold_13266 2453431 88 + 19884421 --------CGC-CUGGCCAUAAAAAGUCACUCAAGUGGUAUUAAAUGUACCACCAAGUGCAGUCAGCAUCGGGAAAUGGCAAGUGGCAACUGAAACU--------- --------.((-(..(((((...............((((((.....))))))((..((((.....))))..))..)))))....)))..........--------- ( -26.10, z-score = -2.01, R) >droEre2.scaffold_4845 9096518 95 - 22589142 ---------UUGCUGGCCAUAAAAAGUCACUCAAGUGGUAUUAAAUGUACCACCAAGUGCAGUCGGCAUCGGGAAAUGGGAAAUGGCAAGUGGCAAAGGAAACU-- ---------(((((.(((((.....((..(((..(((((((.....)))))))...((((.....)))).)))..)).....)))))....)))))((....))-- ( -26.70, z-score = -1.72, R) >droYak2.chr2R 6845865 95 + 21139217 ---------UCGCUGGCCAUAAAAAGUCACUCAAGUGGUAUUAAAUGUACCACCAAGUGCAGUCGGCAUCGGGAAAUGGGAAAUGGCAAGUGGCAAAGGAAACU-- ---------(((((.(((((.....((..(((..(((((((.....)))))))...((((.....)))).)))..)).....))))).)))))...((....))-- ( -27.20, z-score = -2.02, R) >droSec1.super_1 12406499 95 - 14215200 ---------UUGCUGGCCAUAAAAAGUCACUCAAGUGGUAUUAAAUGUACCACCAAGUGCAGUCGGCAGCGGGAAAUGGGAAAUGGCAAGUGGCAAAGGAAACU-- ---------(((((.(((((.....(.((((...(((((((.....)))))))..)))))..(((....)))..........)))))....)))))((....))-- ( -26.20, z-score = -1.29, R) >droSim1.chr2R 13599194 95 - 19596830 ---------UUGCUGGCCAUAAAAAGUCACUCAAGUGGUAUUAAAUGUACCACCAAGUGCAGUCGACAUCGGGAAAUGGGAAAUGGCAAGUGGCAAAGGAAACU-- ---------(((((.(((((.....(.((((...(((((((.....)))))))..)))))..(((....)))..........)))))....)))))((....))-- ( -26.90, z-score = -2.10, R) >droMoj3.scaffold_6496 20253016 77 + 26866924 ---------------ACCAUAAAAAGUCACUCAAGUGGUAUUAAACGUACCGCCAAGUGCA-CCGGUCGAGCG-CCCAGCAAGGCGCAACAGAA------------ ---------------..........((((((...(((((((.....)))))))..)))).)-).......(((-((......))))).......------------ ( -21.80, z-score = -2.24, R) >droVir3.scaffold_12875 1038170 78 + 20611582 ---------------ACCAUAAAAAGUCACUCAAGUGGUAUUAAACGUACCGCCAAGUGCA-CCGGUCGAGCGCCCCAGCAAGACGCAACAGAA------------ ---------------..........((((((...(((((((.....)))))))..)))).)-)..(((..((......))..))).........------------ ( -18.00, z-score = -1.58, R) >droWil1.scaffold_180697 2509853 102 - 4168966 UGGUUGGCCAUGGUGCCCAUAAAAAGUCACUCAAGUGGUAUUAAACGUACCGCCAAGUGCAGCCAGGGGUUUUUAGCCAGAAAUGGCUAGUGGAAAAGGUUA---- ....(((((.....((((.......(.((((...(((((((.....)))))))..)))))......))))..(((((((....))))))).......)))))---- ( -31.22, z-score = -0.98, R) >consensus _________UUGCUGGCCAUAAAAAGUCACUCAAGUGGUAUUAAAUGUACCACCAAGUGCAGUCGGCAUCGGGAAAUGGGAAAUGGCAAGUGGAAAAGGAAACU__ ................((((.....(.((((...(((((((.....)))))))..)))))......(((......)))....)))).................... (-12.55 = -11.99 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:33 2011