| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,896,801 – 14,896,896 |
| Length | 95 |
| Max. P | 0.910344 |
| Location | 14,896,801 – 14,896,896 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 56.45 |
| Shannon entropy | 0.83667 |
| G+C content | 0.43610 |
| Mean single sequence MFE | -24.35 |
| Consensus MFE | -7.59 |
| Energy contribution | -7.49 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.910344 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14896801 95 - 21146708 UUAUGCGGCAACAUAUAAAUC------CUGUAACUGUAGCUGCCACAGUUGCUGCUACCAAUUCGGUUGCCACUGAGGUUUGC------UGUUGUUGUUGUUAUACA ....(((((((((((((....------.))))....((((.(((.((((.((....(((.....))).)).)))).)))..))------)).)))))))))...... ( -26.60, z-score = -0.78, R) >droSim1.chr2R 13595910 101 - 19596830 UUAUGCGGCAACAUAUAAAUC------CUGUAACUGUAGCUGCCACAGUUGCUGCUACCAAUUCGGUUGCCACUGAGGUUUGCCGUUGUUGUUGUUGUUGUUAUACA ....(((((((((........------..((((((((.......))))))))......((((.((((.(((.....)))..))))..)))).)))))))))...... ( -28.80, z-score = -0.97, R) >droYak2.chr2R 6842527 94 + 21139217 UUAUGCGGCAACAUAUAAAUC------CUGUAACUGUAGCUGCCACAGUUGCUGCUACCAAUUCGGUUGCCACUGAUGUA-------GUUUUUGUUGUUGUUACACA ...((..((((((.(((((..------..((((((((.......)))))))).(((((....(((((....))))).)))-------)).)))))))))))..)).. ( -25.90, z-score = -1.25, R) >droAna3.scaffold_13266 2449375 102 + 19884421 UUAUGCGGCAGCAUAUAAAUCGUGUAACUGUAACUUUAGCUGGCACAGUUGCCGCUACUACCGAACAGGACACAGUUGUU-----GUGUUUGCAACACAGUUACACA .(((((....)))))......((((((((((.....((((.((((....))))))))....((((((.((((....))))-----.))))))....)))))))))). ( -38.20, z-score = -3.51, R) >dp4.chr3 5970782 72 - 19779522 UUAUGCGGCAACAUAUAAAUC------CUGUAACAGUAGCUGCCACAGUUGCUGCCA-CAACGCAGUUGCCG-GAACACA--------------------------- ...(.(((((((.((((....------.)))).(((((((((...)))))))))...-.......)))))))-.).....--------------------------- ( -22.60, z-score = -1.93, R) >droPer1.super_2 6171717 72 - 9036312 UUAUGCGGCAACAUAUAAAUC------CUGUAACAGUAGCUGCCACAGUUGCUGCCA-CAACGCAGUUGCCG-GAACACA--------------------------- ...(.(((((((.((((....------.)))).(((((((((...)))))))))...-.......)))))))-.).....--------------------------- ( -22.60, z-score = -1.93, R) >droWil1.scaffold_180697 2503847 96 - 4168966 UUAUGCGGCUACACAUAAAU-------CUGUUGCUGC---UAAAGCUCUUGUUCUACAC-UUUCUCUUUCCCCCUUUUUUUUUGCUCUAUCUCUCUCUCGUUCCAUA ....(((((.(((.......-------.))).)))))---...................-............................................... ( -9.30, z-score = -1.60, R) >droGri2.scaffold_15245 17973201 78 - 18325388 UUAUGCGAUUACACAUAAAU-------CUGCAGCUGC--UUUCAGUGCUUGUUGCUUGU-UGGAUGAUGUUGUAGUUGUACAGACACA------------------- ...(((((((((((((.(((-------..(((((.((--.......))..)))))..))-).....))).))))))))))........------------------- ( -20.80, z-score = -0.49, R) >consensus UUAUGCGGCAACAUAUAAAUC______CUGUAACUGUAGCUGCCACAGUUGCUGCUACCAAUGCAGUUGCCACUGAUGUA_________U_U___U_U_GUUA_ACA ....((((((((...................................)))))))).................................................... ( -7.59 = -7.49 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:32 2011