| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,894,578 – 14,894,675 |
| Length | 97 |
| Max. P | 0.973473 |
| Location | 14,894,578 – 14,894,675 |
|---|---|
| Length | 97 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 71.73 |
| Shannon entropy | 0.59513 |
| G+C content | 0.50951 |
| Mean single sequence MFE | -22.34 |
| Consensus MFE | -11.76 |
| Energy contribution | -11.46 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.973473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14894578 97 + 21146708 CAUUGUGCGAGUCAACUUUGAUUUUGCACGUUAAGCGGCUUAGACCUAAGCCCAACAC--CCAUCAGCCC----ACGCCGAACAGCA---UCACCACACCACCACC ....((((((((((....))).))))))).....((((((((....))))))......--...((.((..----..)).))...)).---................ ( -21.10, z-score = -2.87, R) >droPer1.super_2 6169655 100 + 9036312 CAUUGUGUGAGUCAACUUUGAUUUUGCACGUUAAGCGGCUUAGACUUAAGCCCGACAC--UGAACACCCC----ACUCCGAAUGCCAGGUUCAAUGUCGCACCGCC ....(((..(((((....))).))..))).....((((((((....))))))(((((.--(((((....(----(.......))....))))).)))))....)). ( -26.20, z-score = -1.53, R) >dp4.chr3 5968719 100 + 19779522 CAUUGUGUGAGUCAACUUUGAUUUUGCACGUUAAGCGGCUUAGACUUAAGCCCGACAC--UGAACACCCC----ACUCCGAAUGCCAGGUUCAAUGUCGCACCGCC ....(((..(((((....))).))..))).....((((((((....))))))(((((.--(((((....(----(.......))....))))).)))))....)). ( -26.20, z-score = -1.53, R) >droEre2.scaffold_4845 9090971 92 + 22589142 CAUUGUGCGAGUCAACUUUGAUUUUGCACGUUAAGCGGCUUAUACCUAAGCCCAACACACCCAUCAGCCC----ACGCUGAACAGCA---UC----CAACACC--- ....((((((((((....))).))))))).....((((((((....))))))...........(((((..----..)))))...)).---..----.......--- ( -24.80, z-score = -3.96, R) >droYak2.chr2R 6840265 90 - 21139217 CAUUGUGCGAGUCAACUUUGAUUUUGCACGUUAAGCGGCUUAGACCUAAGCCAAACAC--CCAUCAGCCC----ACGCUGAACAGCA---UC----CAGUGGC--- ((((((((((((((....))).))))))).....((((((((....))))))......--...(((((..----..)))))...)).---..----.))))..--- ( -27.90, z-score = -2.80, R) >droSec1.super_1 12401029 90 + 14215200 CAUUGUGCGAGUCAACUUUGAUUUUGCACGUUAAGCGGCUUAGACCUAAGCCCAACAC--CCAUCAGCCC----ACCCCGAACAGCA---UC----CACCACC--- ....((((((((((....))).))))))).....((((((((....))))))......--...((.....----.....))...)).---..----.......--- ( -17.80, z-score = -2.15, R) >droSim1.chr2R 13593739 90 + 19596830 CAUUGUGCGAGUCAACUUUGAUUUUGCACGUUAAGCGGCUUAGACCUAAGCCCAACAC--CCAUCAGCCC----ACGCCGAACAGCA---UC----CACCACC--- ....((((((((((....))).))))))).....((((((((....))))))......--...((.((..----..)).))...)).---..----.......--- ( -21.10, z-score = -2.74, R) >droWil1.scaffold_180697 2500920 74 + 4168966 CAUUGUGUGACUCAACUUUGAUUUUGCACGUUAAGCGGCUUAGGU-UAAGCCGAACA-----AA-UGCCAAAGCGCGUCAC------------------------- ......(((((.(..(((((.....(((.......(((((((...-)))))))....-----..-)))))))).).)))))------------------------- ( -18.42, z-score = -0.52, R) >droVir3.scaffold_12875 1031115 92 - 20611582 CAUUGUGUGUCUCAACUUUGAUUUUGCACGUUAAGCAGCUUAG-CCUAAGCCCAACGC--CCAGCGGCCC--AUCAGCCCAGUAGC-----UGUUGCCAAAC---- ....(((((((........)))...))))(((..((.(((((.-..))))).....))--..)))(((..--..((((......))-----))..)))....---- ( -18.20, z-score = 0.79, R) >droMoj3.scaffold_6496 20242623 101 - 26866924 CAUUGUCUGUCUCAACUUUGAUUUUGCACGUUAAGCGGCUUAGUUGUAAGCCCAAUGC--CCAG-GGCUAAAAUGCGUCACACGAUGCCAGCGA--CCACGCCCAC ...(((..(((........)))...)))......(.(((...(((((.(((((.....--...)-)))).....(((((....)))))..))))--)...)))).. ( -25.20, z-score = -0.10, R) >droGri2.scaffold_15245 17970853 99 + 18325388 CAUUGUGUGUUUCAACUUUGAUUUUGCACGUUAAGCGGCUUAG-UCUAAGCCCAACGC--CCAGCAGCCUCAAUAGUCCCAGCAACGCCCUUAAUGUCAAAC---- ....(((((((...(((((((..((((.((((..(.((((((.-..))))))))))).--...))))..)))).)))...))).))))..............---- ( -18.80, z-score = -0.36, R) >consensus CAUUGUGUGAGUCAACUUUGAUUUUGCACGUUAAGCGGCUUAGACCUAAGCCCAACAC__CCAUCAGCCC____ACGCCGAACAGCA___UC____CAACACC___ ....(((((..(((....)))...)))))(((....((((((....)))))).))).................................................. (-11.76 = -11.46 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:31 2011