| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,889,187 – 14,889,246 |
| Length | 59 |
| Max. P | 0.668255 |
| Location | 14,889,187 – 14,889,246 |
|---|---|
| Length | 59 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 69.59 |
| Shannon entropy | 0.41171 |
| G+C content | 0.71794 |
| Mean single sequence MFE | -28.67 |
| Consensus MFE | -13.74 |
| Energy contribution | -13.20 |
| Covariance contribution | -0.54 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668255 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14889187 59 - 21146708 UGUGGCGCUGGUACCGCUCGUGUGCGUCCGCCAGUGGUGCCGCUGCCACUCCCAUAUCC .((((((.((((((((((.(((......))).)))))))))).)))))).......... ( -30.00, z-score = -3.90, R) >droAna3.scaffold_13266 2438800 53 + 19884421 UGGGGGGCUGGUACCGCCCGGGUGCG------GGUGGUGCUGCUGCCACUCCCAUAGCC ((((((((.(((((((((((....))------)))))))))...))).).))))..... ( -31.60, z-score = -1.86, R) >droVir3.scaffold_12875 1024797 50 + 20611582 UGGGCCGCUGGCACAGGUCGUGUGCG--------CGGCG-AGCUGCUGCUGCCGUAGCC ..(((((((((((((.....))))).--------)))))-.)))(((((....))))). ( -24.40, z-score = -0.18, R) >consensus UGGGGCGCUGGUACCGCUCGUGUGCG_______GUGGUGCAGCUGCCACUCCCAUAGCC ..(((.....(((((.....))))).......((((((......)))))))))...... (-13.74 = -13.20 + -0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:31 2011