| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,872,604 – 14,872,713 |
| Length | 109 |
| Max. P | 0.705567 |
| Location | 14,872,604 – 14,872,713 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.98 |
| Shannon entropy | 0.37584 |
| G+C content | 0.31594 |
| Mean single sequence MFE | -26.68 |
| Consensus MFE | -15.74 |
| Energy contribution | -15.78 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.705567 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14872604 109 - 21146708 --AUU-GAUUCUUAAGCUUGAAUUCCUGGGGGAUUAAAAUUUCAAUUGAAUUAUGGAGAGUUAAUUUGUGGAAAAUCCAUUUUCUAGGAAUUUAAGC--UUUUUUGCCAAUGGA --(((-(......((((((((((((((((..(((.....(((((...((((((........)))))).))))).....)))..))))))))))))))--))......))))... ( -32.90, z-score = -3.43, R) >droEre2.scaffold_4845 9067947 113 - 22589142 AUAUUCAAUUCUUAAGCUUGAAUUCCUGGGGAAUUAACAUUUCAAUUGAAUUCUGGAAGGUUAAUUUGCGAGAAAUUCAAAUUCUGGGAAUUUUAGC-UUUUUUUGCCGAUGGA .(((((((.....(((((.((((((((.(.((((((((.(((((.........))))).)))))))).).((((.......)))))))))))).)))-))...)))..)))).. ( -25.50, z-score = -0.87, R) >droYak2.chr2R 6817399 97 + 21139217 --------AUAUCAAGCUUGAGUUUCUGGGGAAUUAAAAUUAUAAUUCAAUACUGGAA---UGAUU------AAAUUAAAAUUCUGGGAAUUUUUUCCUCUUUUUGCCGUUGGA --------...((((((((((..(((..(.((((((......))))))....)..)))---...))------))...........(((((....)))))......))..)))). ( -15.40, z-score = 0.48, R) >droSim1.chr2R 13571370 110 - 19596830 GUAUU-GAUUCUUAAGCUUGGAUUCCUGGGGUAUUAAAAUUUCAAUUGAAUUAUGGAACGUUAAUUUGUGGGAAAUCCAUUUUCUAGGAAUUUCGGC---UUUUUGUCGAUGGA .((((-(((....(((((..(((((((((((.......(((((...(((((((........)))))))...))))).....)))))))))))..)))---))...))))))).. ( -30.80, z-score = -3.01, R) >droSec1.super_1 12378684 111 - 14215200 AUAUU-GAUUCUUAAGCUUGGAUUCCUGGGGUAUUAAAAUUUCAAUUGAAUUAUGGAACGUUAAUUUGUGGGAAAUCCAUUUUCUAGGAAUUUCGGC--UUUUUUGCCGAUGGA .....-((((((((....((((((((((.((.(((((..(((((.........)))))..))))))).)))).)))))).....))))))))(((((--......))))).... ( -28.80, z-score = -2.00, R) >consensus _UAUU_GAUUCUUAAGCUUGAAUUCCUGGGGAAUUAAAAUUUCAAUUGAAUUAUGGAACGUUAAUUUGUGGGAAAUCCAUUUUCUAGGAAUUUCAGC__UUUUUUGCCGAUGGA ...............(((.((((((((((((((((((..(((((.........)))))..)))))))..((.....))....))))))))))).)))................. (-15.74 = -15.78 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:28 2011