Locus 4651

Sequence ID dm3.chr2R
Location 14,860,977 – 14,861,072
Length 95
Max. P 0.609604
window6386

overview

Window 6

Location 14,860,977 – 14,861,072
Length 95
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 91.37
Shannon entropy 0.15044
G+C content 0.64423
Mean single sequence MFE -38.88
Consensus MFE -32.50
Energy contribution -32.42
Covariance contribution -0.08
Combinations/Pair 1.08
Mean z-score -1.61
Structure conservation index 0.84
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.24
SVM RNA-class probability 0.609604
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 14860977 95 + 21146708
UGAUCUCACCGAGAGCGGCAGUGAGUCGGGAGACAACGAGGCCGAGGAACCU---GUAUCCGCUGGCCCGGAUAAUGCCAACGCCAUCGGUGAGCCGG
....((((((((..((((((....(((....)))..((.(((((.(((....---...)))..))))))).....))))...))..)))))))).... ( -40.10, z-score =  -2.24, R)
>droSim1.chr2R 13559668 95 + 19596830
UGAUCUCACCGAGAGCGGCAGUGAGUCGGGAGACAACGAGGCCGAGGAACCC---GUAUCCGCUGGCCCGGAUAAUGCCAACGCCAUCGGUGAGCCGG
....((((((((..((((((....(((....)))..((.(((((.(((....---...)))..))))))).....))))...))..)))))))).... ( -40.10, z-score =  -2.15, R)
>droSec1.super_1 12366930 95 + 14215200
UGAUCUCACCGAGAGCGGCAGUGAGUCGGGAGACAACGAGGCCGAGGAACCC---GUAUCCGCUGGCCCGGAUAAUGCCAACGCCAUCGGUGAGGCGG
.(.(((((((((..((((((....(((....)))..((.(((((.(((....---...)))..))))))).....))))...))..)))))))))).. ( -41.50, z-score =  -2.38, R)
>droYak2.chr2R 6805615 98 - 21139217
CGAUCUCACCGAGAGCGGCAGUGAGUCGGGCGACAACGAGGCCGAGGAGGCCUCUGGAGCCGCAGGUCCGGAUAAUACUAACGCCACCGGUGAGCCGG
((..(((((((...(((((.((..(((....))).))((((((.....))))))....))))).(((..((......))...)))..))))))).)). ( -42.20, z-score =  -1.70, R)
>droEre2.scaffold_4845 9052508 95 + 22589142
AGAUCUCACCGAGAGCGGCAGUGAGUCGGGGGACAACGAGGCCGAGGAACCC---GUAGCCGCAGGUCCGGAUAAUACAAACGCCACCGGUGAGCCGG
....(((((((...(((((.....(((....))).(((.((........)))---)).))))).(((...(......)....)))..))))))).... ( -30.50, z-score =   0.43, R)
>consensus
UGAUCUCACCGAGAGCGGCAGUGAGUCGGGAGACAACGAGGCCGAGGAACCC___GUAUCCGCUGGCCCGGAUAAUGCCAACGCCAUCGGUGAGCCGG
....((((((((..(((...(((.(((....)))..((.((((..((............))...)))))).....)))...)))..)))))))).... (-32.50 = -32.42 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:24 2011