| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,858,702 – 14,858,767 |
| Length | 65 |
| Max. P | 0.996510 |
| Location | 14,858,702 – 14,858,767 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 81.99 |
| Shannon entropy | 0.33150 |
| G+C content | 0.49037 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -17.76 |
| Energy contribution | -18.28 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.06 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.94 |
| SVM RNA-class probability | 0.996510 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14858702 65 + 21146708 GCGCAUCUGGCGGGAAGCCAAAAAAGCAAUUAGAUGCCAUGCGAUAGUUAUGGCUAGAUGUGCAA (((((((((((((....))......(((......)))(((((....).))))))))))))))).. ( -25.00, z-score = -3.13, R) >droEre2.scaffold_4845 9050284 64 + 22589142 GCGCAUCUGGCGGGAAGC-GAUAAUGCAAAUUUCCGCCAGGCGAUGCUUAUAGCUAGAUGUGCAA ((((((((((((((((((-......))...)))))))).(((..........))))))))))).. ( -27.40, z-score = -3.06, R) >droYak2.chr2R 6803290 53 - 21139217 GCGCAUUUGGCGGGAAGG-GAUAAUGCAC-----------GCGAUAGUUUUAGCUAGAUGUGCAA (((((((((((..((((.-..((.((...-----------.)).)).)))).))))))))))).. ( -17.00, z-score = -2.58, R) >droSec1.super_1 12364634 64 + 14215200 GCGCAUCUGGCGGCAAGC-GAUAAUGCAAUUAGUCGCCAUGCGAUAGUUUUAGCUAGAUGUGCAA (((((((((((.(((...-.....))).....(((((...))))).......))))))))))).. ( -26.80, z-score = -3.26, R) >droSim1.chr2R 13557359 64 + 19596830 GCGCAUCUGGCGGCAAGC-GAUAAUGCAAUUAGUCGCCAUGCGAUAGUUUUAGCUAGAUGUGCAA (((((((((((.(((...-.....))).....(((((...))))).......))))))))))).. ( -26.80, z-score = -3.26, R) >consensus GCGCAUCUGGCGGGAAGC_GAUAAUGCAAUUAGUCGCCAUGCGAUAGUUUUAGCUAGAUGUGCAA (((((((((((.....((.......)).......(((...))).........))))))))))).. (-17.76 = -18.28 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:23 2011