| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,245,334 – 3,245,385 |
| Length | 51 |
| Max. P | 0.867679 |
| Location | 3,245,334 – 3,245,385 |
|---|---|
| Length | 51 |
| Sequences | 9 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 67.75 |
| Shannon entropy | 0.67003 |
| G+C content | 0.40323 |
| Mean single sequence MFE | -10.69 |
| Consensus MFE | -4.70 |
| Energy contribution | -5.36 |
| Covariance contribution | 0.66 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.867679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3245334 51 + 23011544 UUUCCCCGUCAACAUUUGCACUUGGACAAUUCUGUUUGAGUUAGCGAAAGA-- ..............((((((((..((((....))))..)))..)))))...-- ( -12.00, z-score = -1.85, R) >droWil1.scaffold_180708 503288 53 - 12563649 UUUCUUCACUCGUAUUUACUUUCUCGCUGCUGUAACUCAAUCACAAAAAGGAA ..................................................... ( 0.00, z-score = 1.82, R) >droPer1.super_10 3067883 50 - 3432795 -UUCAGACUCAUUCUUGGCUCUGGGAUAAUUUUGUUUGACUAGGCAAAGCA-- -((((((..((....))..))))))....(((((((......)))))))..-- ( -9.40, z-score = -0.29, R) >dp4.chr4_group4 1311922 50 + 6586962 -UUCAGACUCAUUCUUGGCUCUGGGAUAAUUUUGUUUGACUAGGCAAAGCA-- -((((((..((....))..))))))....(((((((......)))))))..-- ( -9.40, z-score = -0.29, R) >droAna3.scaffold_12904 54978 51 - 61084 UAUCAUCCUCAGUGCCAGCACUUGGACAAGUCUGUUUGAGUUGACAGAGUA-- .....(((..((((....)))).)))..(.((((((......)))))).).-- ( -13.10, z-score = -0.88, R) >droEre2.scaffold_4929 3282732 51 + 26641161 UUUCACCAUCAGCACUCGCACUUGGACAAUUCUGUUUGAGUUAGCGAGAGA-- ..............((((((((..((((....))))..)))..)))))...-- ( -16.30, z-score = -3.06, R) >droYak2.chr2L 3235168 51 + 22324452 UUUCACCAUCAACAUUUGCACUUGGACAAUUCUGUUUGAGUUAGCGAAAGA-- ..............((((((((..((((....))))..)))..)))))...-- ( -12.00, z-score = -2.13, R) >droSec1.super_5 1394861 51 + 5866729 UUUCCCCAUCAACAUUUGCACUUGGACAAUUCUGUUUGAGUUAGCGAAAGA-- ..............((((((((..((((....))))..)))..)))))...-- ( -12.00, z-score = -2.23, R) >droSim1.chr2L 3189092 51 + 22036055 UUUCCCCAUCAACAUUUGCACUUGGACAAUUCUGUUUGAGUUAGCGAAAGA-- ..............((((((((..((((....))))..)))..)))))...-- ( -12.00, z-score = -2.23, R) >consensus UUUCACCAUCAACAUUUGCACUUGGACAAUUCUGUUUGAGUUAGCGAAAGA__ ..............(((((.((..((((....))))..))...)))))..... ( -4.70 = -5.36 + 0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:23 2011