| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,848,716 – 14,848,806 |
| Length | 90 |
| Max. P | 0.960833 |
| Location | 14,848,716 – 14,848,806 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 72.12 |
| Shannon entropy | 0.48461 |
| G+C content | 0.37285 |
| Mean single sequence MFE | -21.64 |
| Consensus MFE | -13.64 |
| Energy contribution | -14.20 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.960833 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14848716 90 + 21146708 -------UUUUAUCCGUAUGCAUGAAUAU-AAUUUGUAGCCAUAAGGCUGCAUAAGGUUAAGAUGCUUAGUUGCGGGUCGGGAACUAAGAACUGAGAU -------.....((((((.((((....((-....(((((((....)))))))....))....)))).....))))))((((..........))))... ( -23.50, z-score = -1.67, R) >droAna3.scaffold_13266 2396140 90 - 19884421 GUUUCUAAACUAUCUAUAUUUCUUAAAAU--AUUCACUUCCA-GAAUAUGUAAAAGGUUAAA--GCUAAGGUA---GUUGGAAACCCAGAACCGAGAU ((((((((.((((((............((--((((.......-))))))......(((....--))).)))))---)))))))))............. ( -16.90, z-score = -1.45, R) >droEre2.scaffold_4845 9040358 91 + 22589142 -------AAUUAUCCUGAUGUAUGAAUAUCAUUUUGUGGCCAAGAGGCUACAGAAGGUUAAGAUGUUUAGUUGCGGGUCGGGAACUAAGAACCGAGAU -------......((((.....((((((((.((((((((((....))))))))))......))))))))....))))((((..........))))... ( -28.20, z-score = -3.40, R) >droYak2.chr2R 6793080 91 - 21139217 -------UAUUAUCUUUAUGUAUGAAUAUUAGUUUGUAGCCAUGAGGCGGCAGAAGGUUAAGAUGUUUAGUGGCGGGUCGGGAACUAAGAACCGAGAU -------...........(((.((((((((..(((((.(((....))).))))).......))))))))...)))..((((..........))))... ( -17.90, z-score = -0.10, R) >droSim1.chr2R 13547361 94 + 19596830 ---UAUCAUAUAAAUUUAUUCCUGAAUAU-AAUUUGUAGCCAUGAGGCUACAGAAGGUUAAAAAGUUUAGUUGCGGGUCGGGAACUAAGAACCGAGAU ---...........(((((((((((....-..(((((((((....)))))))))..........((......))...))))))).))))......... ( -21.70, z-score = -1.94, R) >consensus _______AAUUAUCUUUAUGUAUGAAUAU_AAUUUGUAGCCAUGAGGCUGCAGAAGGUUAAGAUGUUUAGUUGCGGGUCGGGAACUAAGAACCGAGAU ................................(((((((((....))))))))).((((......(((((((.(......).)))))))))))..... (-13.64 = -14.20 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:19 2011