| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,842,091 – 14,842,205 |
| Length | 114 |
| Max. P | 0.901145 |
| Location | 14,842,091 – 14,842,205 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 128 |
| Reading direction | forward |
| Mean pairwise identity | 84.76 |
| Shannon entropy | 0.25419 |
| G+C content | 0.37263 |
| Mean single sequence MFE | -30.09 |
| Consensus MFE | -24.74 |
| Energy contribution | -26.36 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14842091 114 + 21146708 GGGUACCAAAGGUGUGUGGGCAUUUAUUAUUCAACUCUGUGACAACACACUUAACAUUCUAUGAUUAUUCAACGGACUUCAUGGGAAAAAAGCAUUUCCCAUAUCUCAACAAAA-------------- ((((.((..((((((((...(((...............)))...)))))))).........(((....)))..)))))).((((((((......))))))))............-------------- ( -24.56, z-score = -1.52, R) >droYak2.chr2R 6786658 126 - 21139217 GGGUACCAAAGGUGUGUGGGCAUUUAUUAUUCAACUCUGUGACAACACACUUAACAUUCUAUGAUUAUUCACUGGACUCUAUGGGAAACAA--AUUUCCUAAAUGCCUGAGGUAUCUUACAUUACAAA (((((((..(((((((((..(((...............)))....))))).......(((((((....))).)))).....(((((((...--.)))))))...))))..)))))))........... ( -28.76, z-score = -1.54, R) >droSec1.super_1 12348314 126 + 14215200 GGGUACCAAAGGUGUGUGGGCAUUUAUUAUUCAACUCUGUGACAACACACUUAACAUUCUAUGAUUAUUCACCGGACUUUAUGGGAAAAAGUCAUUUCCCAUAUACCAAGGGUAUCUGAACAAAAA-- (((((((...((((((((((.................((((....))))...........((((((.((..(((.......)))..)).))))))..))))))))))...))))))).........-- ( -34.60, z-score = -2.52, R) >droSim1.chr2R 13540974 125 + 19596830 GGGUACCAAAGGUGUGUGGGCAUUUAUUAUUCAACUCUGUGACAACACACUUAACAUUCUAUGAUUAUUCACCGGACUUUAUGGGAAAAAGGCAUUUCCCAUAUACCAAGGGUAUCUGAACAAAA--- (((((((..((((((((...(((...............)))...)))))))).....................((....(((((((((......)))))))))..))...)))))))........--- ( -32.46, z-score = -1.82, R) >consensus GGGUACCAAAGGUGUGUGGGCAUUUAUUAUUCAACUCUGUGACAACACACUUAACAUUCUAUGAUUAUUCACCGGACUUUAUGGGAAAAAAGCAUUUCCCAUAUACCAAGGGUAUCUGAACAAAA___ (((((((..((((((((...(((...............)))...)))))))).....................((....(((((((((......)))))))))..))...)))))))........... (-24.74 = -26.36 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:18 2011