| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,832,413 – 14,832,569 |
| Length | 156 |
| Max. P | 0.990736 |
| Location | 14,832,413 – 14,832,569 |
|---|---|
| Length | 156 |
| Sequences | 4 |
| Columns | 171 |
| Reading direction | reverse |
| Mean pairwise identity | 81.91 |
| Shannon entropy | 0.27385 |
| G+C content | 0.26210 |
| Mean single sequence MFE | -31.59 |
| Consensus MFE | -23.31 |
| Energy contribution | -22.93 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.89 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.44 |
| SVM RNA-class probability | 0.990736 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14832413 156 - 21146708 UUGACCUUUGUAAUAUCCAGUUACAAGUGUUUGGGAAACAAAUAACACAUUUUU-------------UUUAAAA--UUUAUUGAGAACGAAUGUGUAAUCUUUAUUCCCUCUUAUUUAUAUUUAUUUUAUCUGCAUUAUUUGUUCUUGAUAAAUGUUGUACACUUAACCCU .......(((((((.....)))))))(((((..(....)....)))))......-------------......(--(((((..((((((((((((((..................................)))).))))))))))..))))))((((......))))... ( -29.88, z-score = -2.77, R) >droSim1.chr2R 13531328 148 - 19596830 UUGAUCUUUGUUAUAUCCAGUUACAAGUGUUUGGGAAACAAACAA-ACAAC--------------------ACA--UUUAUUGGGAACGAAUGUGUAUUUUUUAUUCCCUCUUAUUUAUAUUUAUUUUAUCUGCAUUAUUUGUUCUUGAUAAAUGUUGUACUCUUAACCCU ...................((((..((((((((.....)))))..-...((--------------------(((--(((((..((((((((((((((..................................)))).))))))))))..))))))).))))))..))))... ( -30.58, z-score = -2.58, R) >droSec1.super_1 12338706 148 - 14215200 UUGAUAUUUGUUAUAUCCAGUUACAAGUGUUUAGGAAAAAAACAA-ACAAC--------------------ACA--UUUAUUGGGAACGAAUGUGUAUUCUUUAUUCCCUCUUAUUUAUAUUUAUUUUAUCUGCAUUAUUUGUUCUUGAUAAAUGUUGUACUCUUAACCCU ..(((((.....)))))..((((..(((((((.(........)))-)).((--------------------(((--(((((..((((((((((((((..................................)))).))))))))))..))))))).))))))..))))... ( -28.68, z-score = -2.35, R) >droYak2.chr2R 6776681 171 + 21139217 UUGAUCUUUUUAAUAUCCAGUUAAAAAUGUUUGGGAACCAAAUAACAUAUUUUUGGAAGAUAAGAGAUCAAACAAUUUUAUUAAGAACAAAUGUGUAAUCUUUAUUCUUUCUUAUAUAUAUUUAUUCUACCUGCACCAUUUGUUCUUGACAAAUAUUGUACACUUAACCCA ((((((((((.....(((((.......(((((((...)))))))........)))))....))))))))))((((((((.(((((((((((((((((..................................)))).))))))))))))).))).)))))............ ( -37.24, z-score = -3.85, R) >consensus UUGAUCUUUGUAAUAUCCAGUUACAAGUGUUUGGGAAACAAACAA_ACAAC____________________ACA__UUUAUUGAGAACGAAUGUGUAAUCUUUAUUCCCUCUUAUUUAUAUUUAUUUUAUCUGCAUUAUUUGUUCUUGAUAAAUGUUGUACACUUAACCCU ......((((((((.....))))))))((((((.....))))))...........................(((..(((((((((((((((((((((..................................)))).)))))))))))))))))...)))............ (-23.31 = -22.93 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:17 2011