| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,782,300 – 14,782,374 |
| Length | 74 |
| Max. P | 0.983472 |
| Location | 14,782,300 – 14,782,374 |
|---|---|
| Length | 74 |
| Sequences | 6 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 88.38 |
| Shannon entropy | 0.22554 |
| G+C content | 0.47973 |
| Mean single sequence MFE | -23.12 |
| Consensus MFE | -19.64 |
| Energy contribution | -20.03 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.14 |
| SVM RNA-class probability | 0.983472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14782300 74 + 21146708 GUGACUCGACUUGACUUGAGGUUGAGUCGAGUUGACUUGGCCGCCUGUCAUUCUGCCCUUAAAUAGGGUACUGU ..(((((((((..((.....))..)))))))))(((..((...)).)))....((((((.....)))))).... ( -29.00, z-score = -3.94, R) >droSim1.chr2R 13482949 74 + 19596830 GUGACUCGACUUGACUUGAGGUUGAGUCGAGUUGACUUUGCCGCCUGUCAUUCUGCCCUAAAAUAAGGUACUAU ..(((((((((..((.....))..)))))))))(((..........)))....((((.........)))).... ( -22.10, z-score = -2.90, R) >droSec1.super_1 12288595 74 + 14215200 GUGACUCGACUUGACUUGAGGUUGAGUCGAGUUGAAUUUGCCGCCUGUCAUUCUGCCCUAAAAUAAGGUACUAU ..(((((((((..((.....))..))))))))).........((((...................))))..... ( -21.41, z-score = -2.89, R) >droYak2.chr2R 6725295 74 - 21139217 GUGACUCGACUUGACUUGAGGUUGAGUCGAGUUGACUUUGCCGCCUGUCAUUCUGCCUUAAAAUGGGGUACUAU ..(((((((((..((.....))..)))))))))(((..........)))....((((((.....)))))).... ( -25.00, z-score = -3.23, R) >droEre2.scaffold_4845 8974280 73 + 22589142 GUGACUCGACUUGACUUGAGGUUGAAUCAAGUUGACUGUGCCGCCUGUCAU-CUGCCCUAAGGUAGGGUACUAU .....(((((((((.((......)).)))))))))..((((((.....)..-(((((....))))))))))... ( -19.70, z-score = -0.80, R) >droAna3.scaffold_13266 2325347 73 - 19884421 GAGACUUG-CCUGUCUUGAGGUUGAGUCGAGUUGACUUUGCCGCCUGUCACUCUGCUCUUGCCAAGGGUAUUAU (((((...-...)))))..(((.((((.((((.(((..........))))))).))))..)))........... ( -21.50, z-score = -1.10, R) >consensus GUGACUCGACUUGACUUGAGGUUGAGUCGAGUUGACUUUGCCGCCUGUCAUUCUGCCCUAAAAUAGGGUACUAU ..((((((((((......))))))))))((((.(((..........)))))))((((((.....)))))).... (-19.64 = -20.03 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:10 2011