| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,245,103 – 3,245,210 |
| Length | 107 |
| Max. P | 0.639936 |
| Location | 3,245,103 – 3,245,210 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 78.94 |
| Shannon entropy | 0.40556 |
| G+C content | 0.40654 |
| Mean single sequence MFE | -24.85 |
| Consensus MFE | -16.15 |
| Energy contribution | -16.10 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3245103 107 + 23011544 CAUCACGUAUACGAGCGGUGGACGUGGGUGAAAUCGAUUCACCUACCUACAUAUAAGAUGUAUGAUGGCGAUUACAGAUUUAUAGAUUUUAAAUUGCACUAGGCCAG-- (((((..(((.......((((..(((((((((.....))))))))))))).......)))..)))))((((((..(((((....)))))..))))))..........-- ( -28.74, z-score = -2.34, R) >droAna3.scaffold_12904 54768 96 - 61084 GGUCACGUAUGCGAAUGG-AAUCGUAAGAAAAAUCGAUUUUCCUG--------UAAACUAUAUUCCGUGUAUUUCAGUCUAAUAGGGAAAGGGUUUUACUUUAAG---- .........(((((....-..)))))((.((((((..((((((((--------(..(((((((.....))))...)))...))))))))).)))))).)).....---- ( -16.50, z-score = 0.14, R) >droEre2.scaffold_4929 3282496 107 + 26641161 CAUCACGUAUACGAGCGGUGGACGUGGGCGAAAUCGAUUCACCUAGGAGUAUAUAAGAUGUAUGAUGGCGAUUACAGAUUUAUAGAUUUUAAAUUGCACCGGGCCAG-- ...(((((.(((.....))).)))))((((((.....))).((..((.(((..((((((.(((((...(.......)..))))).))))))...))).)))))))..-- ( -24.40, z-score = -0.49, R) >droYak2.chr2L 3234953 105 + 22324452 CAUCACGUAUACGACCGGUGGACGUGGGUGAAAUCGAUUCACCUAC----AUAUAAGAUGUAUGCUGGCGAUUACAGAUUUAUAGAUUUUAAAUUGCACUAGGCCCUAG ((((..((.(((.....))).))(((((((((.....)))))))))----......))))...(((.((((((..(((((....)))))..))))))....)))..... ( -26.60, z-score = -1.55, R) >droSec1.super_5 1394629 103 + 5866729 CAUCACGUAUACGAGCGGUGGACGUGGGUGAAAUCGAUUCACCUAC----AUAUAAGAUGUAUGAUGGCUAUUACAGAUUUAUAGAUUUUAAAUUGCACUAGGCCAG-- ((((.(((......)))......(((((((((.....)))))))))----......)))).....(((((......((((((.......))))))......))))).-- ( -27.40, z-score = -2.37, R) >droSim1.chr2L 3188861 103 + 22036055 CAUCACGUAUACGAGCGGUGGACGUGGGUGAAAUCGAUUCGCCUAC----AUAUAAGAUGUAUGAUGGCGAUUACAGAUUUAUAGAUUUUAAAUUGCACUAGGCCAG-- ((((.(((......)))......(((((((((.....)))))))))----......)))).....((((.......((((((.......)))))).......)))).-- ( -25.44, z-score = -1.28, R) >consensus CAUCACGUAUACGAGCGGUGGACGUGGGUGAAAUCGAUUCACCUAC____AUAUAAGAUGUAUGAUGGCGAUUACAGAUUUAUAGAUUUUAAAUUGCACUAGGCCAG__ (((((..(((.............(((((((((.....)))))))))...........)))..)))))((((((..(((((....)))))..))))))............ (-16.15 = -16.10 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:22 2011