| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,780,114 – 14,780,206 |
| Length | 92 |
| Max. P | 0.791855 |
| Location | 14,780,114 – 14,780,206 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 68.68 |
| Shannon entropy | 0.60514 |
| G+C content | 0.36065 |
| Mean single sequence MFE | -18.71 |
| Consensus MFE | -7.43 |
| Energy contribution | -7.61 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.791855 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14780114 92 + 21146708 --UAUAUACAUAUAUACUUUUGGGAGCGUGAAUGUU--UGUACUUUUCAGUGCUACCAAUUAAGUGUGAAAAACCUUUUU-CACUUCUCCACUUCUU-- --.............((((((((.((((((((.((.--...))..)))).)))).))))..))))(((((((....))))-))).............-- ( -17.60, z-score = -1.79, R) >droSim1.chr2R 13480733 94 + 19596830 UACAUUCACAGAUAUACUUUUGGGAGCGUGAAUGUU--UGUACUUUUCAGUGCUACCAAUUAAGUGUGAAAAACCUUUUU-CACUUCUCCACUUCUU-- .........(((...((((((((.((((((((.((.--...))..)))).)))).))))..))))(((((((....))))-))).))).........-- ( -17.70, z-score = -1.06, R) >droSec1.super_1 12286373 94 + 14215200 UACAUUCACAUAUAUACUUUUGGGAGCGUGAAUGUU--UGUACUUUUCAGUGCUACCAAUUAAGUGUGAAAAACCUUUUU-CACUUCUCCACUUCUU-- ....(((((((.((.....((((.((((((((.((.--...))..)))).)))).)))).)).)))))))..........-................-- ( -17.80, z-score = -1.64, R) >droYak2.chr2R 6723073 88 - 21139217 --------UGUAUACACUUU-GGGAGCGUGAAUGUU--UGUACUUUUCAGUGCUACCAAUUAAGUGUGAAAAACCUUUUUUCACUUCUCUACCUCUUUU --------.....(((((((-((.((((((((.((.--...))..)))).)))).)))...))))))(((((.....)))))................. ( -16.80, z-score = -1.22, R) >droEre2.scaffold_4845 8972056 85 + 22589142 --------UAUAUACAUUUU-GGGAGCGUGAAUGUU--UGUACUUUUCAGUGCUACCAAUUAAGUGUGAAAAACCUUUUU-CACUUCUCUACUUCUU-- --------..........((-((.((((((((.((.--...))..)))).)))).))))......(((((((....))))-))).............-- ( -16.10, z-score = -1.47, R) >droAna3.scaffold_13266 2322639 83 - 19884421 ---ACACUGAUUUUUUUUCUAAAGUGUAUGUAUAUCGGUGUGCUUUUCUGGGCUACCAAUUAAGUGUGAAAAACCUUUUU-CACUUU------------ ---((((((((.......(......).......))))))))((((...(((....)))...))))(((((((....))))-)))...------------ ( -18.84, z-score = -2.61, R) >droWil1.scaffold_180697 2349496 82 + 4168966 UGGUUACUACUGCCGACUGGUGGCUGCUUGAUUAUU--UAUAAUUUUUGGGGCCA--AAUGUGGUCGCGAAGGCGAUGCC-CAGCUC------------ .(((.......)))(.(((((((((.(..(((((..--..)))))...).)))))--......(((((....)))))..)-))))..------------ ( -26.10, z-score = -1.31, R) >consensus ___AUACACAUAUAUACUUUUGGGAGCGUGAAUGUU__UGUACUUUUCAGUGCUACCAAUUAAGUGUGAAAAACCUUUUU_CACUUCUCCACUUCUU__ ............(((((((...((((((((((.............)))).)))).))....)))))))............................... ( -7.43 = -7.61 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:09 2011