| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,770,253 – 14,770,323 |
| Length | 70 |
| Max. P | 0.898941 |
| Location | 14,770,253 – 14,770,323 |
|---|---|
| Length | 70 |
| Sequences | 7 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 60.83 |
| Shannon entropy | 0.72006 |
| G+C content | 0.48058 |
| Mean single sequence MFE | -19.71 |
| Consensus MFE | -8.45 |
| Energy contribution | -8.11 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898941 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14770253 70 - 21146708 -------UACUAUUUUGUGUGGGAGGCCAAGUCUUUGCUGGCGUACCCUUGGCAGAACAGUCUGUCAAGAGGAAAUC -------..((((.....))))...((((.((....))))))...(((((((((((....))))))))).))..... ( -22.00, z-score = -1.43, R) >droEre2.scaffold_4845 8962199 62 - 22589142 ------------UUUUGUGUGGGAGGCAAAGUCUUUGCUU---CGCAUAUGGCAUAGCAGUCUGUCAAGAGGAAAUC ------------....(((((.(((((((.....))))))---).)))))((((........))))........... ( -16.70, z-score = -1.48, R) >droYak2.chr2R 6712972 65 + 21139217 ------------UUUUGUGUGGGCGGCAAAGUCGUUGCUCGUGUUCCCUUGGCAGAGCAGUCUGUCAAGAGGAAAUC ------------....(..((((((((......))))))))..)((((((((((((....))))))))).))).... ( -26.80, z-score = -4.14, R) >droSec1.super_1 12276524 70 - 14215200 -------UACCAUUUUGUGUGGGAGGCCAAGUCUUUGCCUGCGUACCUUUGGCAGAACAAUCUGUCAAGAGGAAAUC -------..((((.....)))).((((.........)))).....(((((((((((....)))))).)))))..... ( -20.10, z-score = -1.15, R) >droSim1.chr2R 13471467 70 - 19596830 -------UACCAUUUUGUGUGGGAGGCCAAGUCUUUGCUGGCGUACCCUUGGCAGAACAGUCUGUCAAGAGGAAAUC -------..((((.....))))...((((.((....))))))...(((((((((((....))))))))).))..... ( -24.30, z-score = -1.99, R) >dp4.chr3 5846640 76 - 19779522 UACCCUUUGGUGAUGGGUUUUAUGGGCCUGACCCUUCGUUAAGGGUAUUUGGGGAGACA-UUUGGGGAAAAAACAUC ((((((.(..(((.(((((..........))))).)))..))))))).....(....).-................. ( -19.20, z-score = 0.40, R) >droPer1.super_2 6046770 53 - 9036312 -----------------------AGGCCUGUCCCUUCGUUAAGGGUAUUUGGGGAGACA-UUUGGGGAAAAAACAUC -----------------------...(((..(((((....))))).......(....).-...)))........... ( -8.90, z-score = 1.51, R) >consensus _______U____UUUUGUGUGGGAGGCCAAGUCUUUGCUUGCGUACCUUUGGCAGAACAGUCUGUCAAGAGGAAAUC .....................(((((.....)))))...........(((((((((....)))))))))........ ( -8.45 = -8.11 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:04 2011