| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,769,687 – 14,769,765 |
| Length | 78 |
| Max. P | 0.895389 |
| Location | 14,769,687 – 14,769,765 |
|---|---|
| Length | 78 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 75.22 |
| Shannon entropy | 0.43846 |
| G+C content | 0.53685 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -20.64 |
| Energy contribution | -20.20 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.895389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14769687 78 + 21146708 -----CAACUUCGUGGCUGGCCCAA--CUGGGCACCCGAAGAUCUUU-------UGGAUCUUUGAGCUCUGGGGUAUAGGGUCUCGGAUCUC -----...(((((.((...((((..--..)))).)))))))......-------.((((((..((((((((.....))))).))))))))). ( -29.50, z-score = -1.86, R) >droAna3.scaffold_13266 2311855 84 - 19884421 CAACUUGGCUUCGUAGAUGGCUCAAAACUCGAGACCCGACGAUCUUU--------GGGACUUUGAGCUGUGAGGUACUUGGAGGAACACCCC ........(((((.((.((.((((...((((((.(((((......))--------)))..))))))...)))).)))))))))......... ( -21.70, z-score = -0.01, R) >droEre2.scaffold_4845 8961652 63 + 22589142 -----CAACUUUGUGGCUGGGCCAA--CUGGGCACCCGAAGAUCUUU--------GGAUCUUUGAGCUCUGGGAUCUC-------------- -----...(((...(((((((((..--...))).))((((((((...--------.))))))))))))..))).....-------------- ( -20.10, z-score = -1.15, R) >droYak2.chr2R 6712408 85 - 21139217 -----CAACUUUGUGGCUGGGCCCA--CUGGGCACCCGAAGAUCUUUAGAUCUUUGGAUCUUUGAGCUCUGGGGUAUAGGGACUCGGAUCUC -----.......(((.(..(.....--)..).)))(((((((((....)))))))))...(((((((((((.....))))).)))))).... ( -30.10, z-score = -1.44, R) >droSec1.super_1 12275972 78 + 14215200 -----CAACUUCGUGGCUGGGCCAA--CUGGGCACCCGAAGAUCUUU-------UGGAUCUUUGAGCUCUGGGGUAUAGGGUCUCGGAUCUA -----..((((((.(((((((((..--...))).))((((((((...-------..)))))))))))).))))))...(((((...))))). ( -27.60, z-score = -1.35, R) >droSim1.chr2R 13470917 78 + 19596830 -----CAACUUCGUGGCUGGGCCAA--CUGGGCACCCGAAGAUCUUU-------UGGAUCUUUGAGCUCUGGGGUAUAGGGUCUCGGAUCUA -----..((((((.(((((((((..--...))).))((((((((...-------..)))))))))))).))))))...(((((...))))). ( -27.60, z-score = -1.35, R) >consensus _____CAACUUCGUGGCUGGGCCAA__CUGGGCACCCGAAGAUCUUU_______UGGAUCUUUGAGCUCUGGGGUAUAGGGUCUCGGAUCUC .......((((((.(((((((((.......))).))(((((((((..........))))))))))))).))))))................. (-20.64 = -20.20 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:03 2011