| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,768,240 – 14,768,341 |
| Length | 101 |
| Max. P | 0.612171 |
| Location | 14,768,240 – 14,768,341 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 81.13 |
| Shannon entropy | 0.38143 |
| G+C content | 0.32317 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -12.22 |
| Energy contribution | -13.81 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14768240 101 + 21146708 ----AACACGCGUCGAAUAAUAUUUUUGUUUGACAAUUUCUGCUGGCAUUUAAUCUGUUUUUGUCGCAUUUUGUGGCAAUUAAAUGGCA-GCGAAUUAAUCAUAAA ----.......(((((((((.....)))))))))...(((.((((.((((((((.......((((((.....)))))))))))))).))-)))))........... ( -29.81, z-score = -3.77, R) >droSim1.chr2R 13469348 101 + 19596830 ----UACACGCGUCGAAUAAUAUUUUUGUUUGACAAUUUCUGCUGGCAUUUUAUCUGUUUUUGUCGCAUUUUGUGGCAAUUAAAUGACA-GCGAAUUAAUCAUAAA ----.......(((((((((.....)))))))))...(((.((((.(((((.........(((((((.....)))))))..))))).))-)))))........... ( -24.90, z-score = -2.43, R) >droSec1.super_1 12274411 101 + 14215200 ----UACACGCGUCGAAUAAUAUUUUUGUUUGACAAUUUCUGCUGGCAUUUUAUCUGUUUUUGUCGCAUUUUGUGGCAAUUAAAUGACA-GCGAAUUAAUCAUAAA ----.......(((((((((.....)))))))))...(((.((((.(((((.........(((((((.....)))))))..))))).))-)))))........... ( -24.90, z-score = -2.43, R) >droYak2.chr2R 6710785 101 - 21139217 ----UACACGCGUCGAAUAAUAUUUUUGUUUGACAAUUUCUGCUGGCAUUUUAUCUGUUUUUGUCGCAUUUUGUGGCAAUUAAAUGACA-GCGAAUUAAUCAUAAA ----.......(((((((((.....)))))))))...(((.((((.(((((.........(((((((.....)))))))..))))).))-)))))........... ( -24.90, z-score = -2.43, R) >droEre2.scaffold_4845 8960101 101 + 22589142 ----UACACGCGUCGAAUAAUAUUUUUGUUUGACAAUUUCUGCUGGCAUUUUAUCUGUUUUUGUCGCAUUUUGUGGCAAUUAAACGACA-GCGAAUUAAUCAUAAA ----....((((((((((((.....))))))))).....................((((((((((((.....)))))))..)))))...-)))............. ( -22.80, z-score = -1.69, R) >droAna3.scaffold_13266 2310188 105 - 19884421 UAUAUAACAGCAAAGGAAAAUAUUUUCAUUUGACUAUUUUUGUUGGCAUUUUAUCUGUUUUUGUCGCAUUUUGUGGCAAUUAAGUGACA-GCGAAUUAAUCAUAAA ........((((((.((((....)))).)))).))...(((((((.(((((.........(((((((.....)))))))..))))).))-)))))........... ( -19.10, z-score = -0.64, R) >droWil1.scaffold_180697 2333103 89 + 4168966 ------------UUCAAAAACGUAUAUUGUCUACAUUUGGCAUCGGC-----GAACAUUUUGGCGGGCCCGUUUGGCAAUUAAAUUCCAAGCGAAUUAAUCAUAAA ------------..........................(((.(((.(-----((.....))).))))))(((((((.(((...))))))))))............. ( -16.80, z-score = 0.07, R) >consensus ____UACACGCGUCGAAUAAUAUUUUUGUUUGACAAUUUCUGCUGGCAUUUUAUCUGUUUUUGUCGCAUUUUGUGGCAAUUAAAUGACA_GCGAAUUAAUCAUAAA ........((((((((((((.....)))))))))..........................(((((((.....)))))))...........)))............. (-12.22 = -13.81 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:02 2011