| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,762,591 – 14,762,645 |
| Length | 54 |
| Max. P | 0.705168 |
| Location | 14,762,591 – 14,762,645 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 86.64 |
| Shannon entropy | 0.22450 |
| G+C content | 0.51111 |
| Mean single sequence MFE | -13.78 |
| Consensus MFE | -13.33 |
| Energy contribution | -13.05 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.18 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.705168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14762591 54 - 21146708 UUGCGAGCUUCUAUAUAGUAUCUGUGUAUAUGGAAGGAGGCGGCAUCGCGAGGC-- (((((((((((((((((.........)))))))).......))).))))))...-- ( -13.51, z-score = -0.28, R) >droSim1.chr2R 13463681 56 - 19596830 UUGCGAGCUUCUAUAUAGUAUCUGUGUAUAUGGAAGGAGGCGGCUUCGCGAGGGAC (((((((((((((((((.........))))))))))........)))))))..... ( -13.70, z-score = -0.36, R) >droSec1.super_1 12268807 56 - 14215200 UUGCGAGCUUCUAUAUAGUAUCUGUGUAUAUGGAAGGAGGCGGCUUCGCGAGGGAC (((((((((((((((((.........))))))))))........)))))))..... ( -13.70, z-score = -0.36, R) >droYak2.chr2R 6705054 54 + 21139217 UUGCGAGCUUCUAUAUAGUAAAUGAAUGUAUGGAGGGAGGGGGCAUCGCGGGGC-- (((((((((((((((((.........)))))))).......))).))))))...-- ( -13.61, z-score = -2.29, R) >droEre2.scaffold_4845 8954459 54 - 22589142 UUGCGAGCUUCUAUAUAGCAAAUGUGUAUGUGGCAGGAGGGGGCAUCGCGAGGC-- ((((((((((((.....(((........))).......)))))).))))))...-- ( -14.40, z-score = -0.85, R) >consensus UUGCGAGCUUCUAUAUAGUAUCUGUGUAUAUGGAAGGAGGCGGCAUCGCGAGGC__ (((((((((((((((((.........)))))))).......))).))))))..... (-13.33 = -13.05 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:33:01 2011