| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,745,023 – 14,745,113 |
| Length | 90 |
| Max. P | 0.636956 |
| Location | 14,745,023 – 14,745,113 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 91.11 |
| Shannon entropy | 0.12244 |
| G+C content | 0.25926 |
| Mean single sequence MFE | -19.97 |
| Consensus MFE | -14.17 |
| Energy contribution | -14.73 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.636956 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14745023 90 - 21146708 UAUCAAAUCAGUAUGAUAUGCAAUCAAAGCUAUGAAUGUAUAGUAUAUGUAAAUAUUUCGAAUCAUGCUGGUAUGCAAGUAUCAUUAAUU ...((.((((((((((((((((.(((......))).))))))(.((((....))))..)...)))))))))).))............... ( -18.40, z-score = -1.29, R) >droSec1.super_1 12253187 90 - 14215200 AAUAAAAUCAGUAUGAUAUGCAAAUAAACGUAUGUAUGUAUAGUAAGUGCAAAUAUUUCAAAUCAUGCUGGUAUGCAAGUAUCAUUAAUU ......(((((((((((.((.(((((...((((.(((.....))).))))...))))))).))))))))))).................. ( -19.40, z-score = -2.26, R) >droSim1.chr2R 13444773 90 - 19596830 AAUCAAAUCAGUAUGAUAUGAAAUUAAACGUAUGUAUGUAUAGUAAGUGCAAAUAUUUCAAAUCAUGCUGGUAUGCAAGUAUCAUUAAUU ...((.(((((((((((.((((((.....((((.(((.....))).))))....)))))).))))))))))).))............... ( -22.10, z-score = -3.59, R) >consensus AAUCAAAUCAGUAUGAUAUGCAAUUAAACGUAUGUAUGUAUAGUAAGUGCAAAUAUUUCAAAUCAUGCUGGUAUGCAAGUAUCAUUAAUU ......(((((((((((.((.(((.....((((.(((.....))).))))....))).)).))))))))))).................. (-14.17 = -14.73 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:56 2011