| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,240,719 – 3,240,811 |
| Length | 92 |
| Max. P | 0.731228 |
| Location | 3,240,719 – 3,240,811 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 82.11 |
| Shannon entropy | 0.29117 |
| G+C content | 0.39344 |
| Mean single sequence MFE | -22.84 |
| Consensus MFE | -15.78 |
| Energy contribution | -15.66 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731228 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3240719 92 + 23011544 GUAGAUUGUCAUGGCGAUGAUGUCGGGAAAGAGGAGAACUUUAUGGAAAUUUUAAA--UUUUUUCGAUUGGACUUCAUUGGCAUCGACAUGGGC------- ......(((((((.((((((.(((.((...(((((((.....((....))......--)))))))..)).))).)))))).))).)))).....------- ( -23.30, z-score = -1.97, R) >droSim1.chr2L 3183165 83 + 22036055 GUAGAUUGUCAUGGCGAUGAUGUCGGGAAAG---AGAACUUUAUGAAAAUUUUAAA--UUUUUUCGAUUGGACUUCAUUGGCAUCGAC------------- .......((((((.((((((.(((.((((((---....)))).((((((.......--..)))))).)).))).)))))).))).)))------------- ( -19.30, z-score = -1.48, R) >droSec1.super_5 1390308 86 + 5866729 GUAGAUUGUCAUGGCGAUGAUGUCGGGAAAGAGGAGAACUUUAUGGAAAUUUUAAA--UUUUUUCGAUUGGACUUCAUUGGCAUCGAC------------- .......((((((.((((((.(((.((...(((((((.....((....))......--)))))))..)).))).)))))).))).)))------------- ( -20.90, z-score = -1.71, R) >droYak2.chr2L 3230681 98 + 22324452 GUAGAUUGUCAUGGUGAUGAUGGUGGAACUG--GGGAACUUUAUGGAAA-UUUAACAGUUUUUCUGAUUCGACUUCAUUGGCAUCGACAUGGGCAUGUGGC ((....(((((((.((((((.(((.((((.(--..((((((((......-..))).)))))..).).))).))))))))).))).))))...))....... ( -25.90, z-score = -1.63, R) >droEre2.scaffold_4929 3278342 92 + 26641161 GUAGAUUGUCAUGGCGAUGAUGUCGGAGCAG--GGUAACUUUAUGGAAAAUUUAACAUUUUUUUUGAUUCGACUUCAUUGGCAUCGACAUGAGC------- ......(((((((.((((((.((((((.(((--((.......(((..........)))...))))).)))))).)))))).))).)))).....------- ( -24.80, z-score = -2.41, R) >consensus GUAGAUUGUCAUGGCGAUGAUGUCGGGAAAG__GAGAACUUUAUGGAAAUUUUAAA__UUUUUUCGAUUGGACUUCAUUGGCAUCGACAUG_GC_______ .......((((((.((((((.((((((((((....(((.(((....))).))).....))))))))))......)))))).))).)))............. (-15.78 = -15.66 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:21 2011