| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,708,397 – 14,708,522 |
| Length | 125 |
| Max. P | 0.679016 |
| Location | 14,708,397 – 14,708,522 |
|---|---|
| Length | 125 |
| Sequences | 5 |
| Columns | 125 |
| Reading direction | forward |
| Mean pairwise identity | 86.16 |
| Shannon entropy | 0.24205 |
| G+C content | 0.37661 |
| Mean single sequence MFE | -31.12 |
| Consensus MFE | -24.86 |
| Energy contribution | -25.18 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.679016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14708397 125 + 21146708 AAAGGCUGUUAGUAUGUUGUGAGCUGGAAAAACUGUAUUGUUUUUCUGUGUUCAUCGUUUAUUUUUGGCCUUCUUGAAAUAUGUAAAUAGGGAUUAUGCUUACCCAAUUUAUUGCCACCUACUGG .(((((((..((((.(..(((((((((((((((......))))))))).))))))..).))))..)))))))..........((((((.(((..........))).)))))).....((....)) ( -30.80, z-score = -2.23, R) >droSim1.chr2R_random 2622503 125 + 2996586 AAAGGCUUUUAGUAUGUUGUGAGCUGGAAAAACUGCAUUGUUUUUCCAUGUUCAUUAUUUACUUUUGGCCUUCUGGAAACAUGUAAAUAGGGAUUAGGUUUACCCAGUUUUUUGCCACCUACUGG .((((((...((((.((.(((((((((((((((......))))))))).)))))).)).))))...)))))).((....)).((((((.........))))))(((((............))))) ( -38.70, z-score = -3.36, R) >droSec1.super_1 12216530 125 + 14215200 AAAGGCUGUUAGUACGUUGUAAGCUGGAAAAACUGCAUUGUUUUUCUGUGUCUAUCAUUUACUUUUGGCCUUCUGGAAACAUGUAAAUAGGGAUUAGGUUUACCCACUUUUUUGCCACCUACUGG .(((((((..((((.((.(((..((((((((((......))))))))).)..))).)).))))..))))))).((....)).(((((.(((.....((....))..))).)))))..((....)) ( -29.60, z-score = -0.63, R) >droYak2.chr2R 6651414 125 - 21139217 AUAAGCUGUCAGUAUUCUGUGAGCUAGAAAAACUGCACUGUUUUUCUUUGUUCGCCGUGUACUUUUGGCCUUCUAGAAACAUGUAAAUUGGGAUUAGGUUUGCCAACAUUAUUGCCACCUACUGG ....((....(((((.(.((((((.((((((((......))))))))..)))))).).))))).(((((..(((((...((.......))...)))))...))))).......))..((....)) ( -29.70, z-score = -0.78, R) >droEre2.scaffold_4845 8900261 124 + 22589142 AUAAGCUGUUAGUAUUUUGUGAGCUAGAAAA-CUUCCCUGCUUUUCUUUGUUCACCGUGUACUUUUGGCCUUCUAGAAACAUGUAAAUUGGGAUUAGGUUUACCAACUUUUUUGCCACCUACUGG ....((((..(((((...((((((.((((((-(......).))))))..))))))...)))))..))))..........((.(((...(((.(..(((((....)))))...).)))..))))). ( -26.80, z-score = -0.77, R) >consensus AAAGGCUGUUAGUAUGUUGUGAGCUGGAAAAACUGCAUUGUUUUUCUGUGUUCAUCGUUUACUUUUGGCCUUCUAGAAACAUGUAAAUAGGGAUUAGGUUUACCCACUUUUUUGCCACCUACUGG .(((((((..((((..(.(((((((((((((((......))))))))).)))))).)..))))..)))))))..........(((((((.......)))))))..............((....)) (-24.86 = -25.18 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:51 2011