| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,603,676 – 14,603,770 |
| Length | 94 |
| Max. P | 0.912160 |
| Location | 14,603,676 – 14,603,770 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 76.38 |
| Shannon entropy | 0.37192 |
| G+C content | 0.55301 |
| Mean single sequence MFE | -31.53 |
| Consensus MFE | -17.00 |
| Energy contribution | -17.62 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.912160 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14603676 94 - 21146708 AAUAAACAAAUAAACAAAGCGCCACCCCUCGCUCAGGGAGGGAGGUGGGUUGUGUCGUUUUGGUGGGACGUGGGAAACUGUACGCGGGCGGUGU ..................(((((.((((((.(((...))).)))(((.(((.(..(.....)..).)))(..(....)..).)))))).))))) ( -29.10, z-score = -0.09, R) >droSim1.chr2R 13313704 85 - 19596830 AAUAAACAAAUAAACAAAGCGCCACCCUUCGCUCA-GGGGGGGGGGGG-------UGUUUUGG-GGGCCGUGGGAAACUGUACGCGGUCGGUAU ..............(((((((((.((((((.(...-.).)))))).))-------))))))).-.((((((((....)....)))))))..... ( -35.70, z-score = -3.65, R) >droSec1.super_1 12111401 86 - 14215200 AAUAAACAAAUAAACAAAGCGCCACCCUUCGCUCAGGGGGGGGGGGGG-------UGUUUUGG-GGGCCGUGGGAAACUGUACGCGGUCGGUAU ..............(((((((((.((((((.((....)).))))))))-------))))))).-.((((((((....)....)))))))..... ( -37.60, z-score = -4.23, R) >droEre2.scaffold_4845 8794847 82 - 22589142 AGUAAACAAAUAAACAAAGCACUCCCCCGGAAGUGAGGGAGGAGAGGG------------AGGGGCUUUGUGGGAAACUGUAUGCGGGCGGUAU .(((.((......(((((((.(((((((............))...)))------------))..)))))))((....)))).)))......... ( -23.70, z-score = -1.47, R) >consensus AAUAAACAAAUAAACAAAGCGCCACCCCUCGCUCAGGGGGGGAGGGGG_______UGUUUUGG_GGGCCGUGGGAAACUGUACGCGGGCGGUAU ....................(((.((((((.(((...))).))))))..................((((((((....))....))))))))).. (-17.00 = -17.62 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:43 2011