| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,601,035 – 14,601,109 |
| Length | 74 |
| Max. P | 0.585784 |
| Location | 14,601,035 – 14,601,109 |
|---|---|
| Length | 74 |
| Sequences | 5 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 74.46 |
| Shannon entropy | 0.46532 |
| G+C content | 0.48397 |
| Mean single sequence MFE | -16.64 |
| Consensus MFE | -10.30 |
| Energy contribution | -9.90 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14601035 74 - 21146708 UGUGCAUCCACAUGCGUGUGCUUCGUUUUAUGGGCACACAUCCUUCGGCUUUCCACGCUCCCCUGCAUUUUUAU .(((((.......((((((((((........)))))))).......((....))..)).....)))))...... ( -17.10, z-score = -1.17, R) >droEre2.scaffold_4845 8792316 67 - 22589142 -------CCACAUGCGUGUGCUUCGUUUUAUGGGCACACAUCCUUCGGUUUUCCACGCUCCCCUGCGCUUUUAU -------......((((((((((........)))))))).......((....))..((......))))...... ( -15.80, z-score = -1.60, R) >droSec1.super_1 12108819 74 - 14215200 UGUGCAUCCACAUGCGUGUGCUUCGUUUUAUGGGCACACAUCCUUCGGUUUUCCACGCUCCCCUGCAUUUUUAU .(((((.......((((((((((........)))))))).......((....))..)).....)))))...... ( -18.10, z-score = -1.76, R) >droSim1.chr2R 13307692 74 - 19596830 UGUGCAUCCACAUGCGUGUGCUUCGUGUUAUGGGCACACAUCCUUCGGUUUUCCACGCUCCCCUGCAUUUUUAU .(((((.......((((((((((........)))))))).......((....))..)).....)))))...... ( -18.10, z-score = -1.15, R) >droGri2.scaffold_15203 6655864 73 - 11997470 CGUGUAUGUACGCGUGUGUGGGU-GUUUGUUAGUCACAACAGUGGUGGAAUCAAAUGCGAAUUAGAAUAUUUGU ((..((((....))))..)).((-(((((....((((.......))))...)))))))................ ( -14.10, z-score = 0.38, R) >consensus UGUGCAUCCACAUGCGUGUGCUUCGUUUUAUGGGCACACAUCCUUCGGUUUUCCACGCUCCCCUGCAUUUUUAU .............((((((((((........))))))))...(....)........))................ (-10.30 = -9.90 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:40 2011