| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,583,061 – 14,583,175 |
| Length | 114 |
| Max. P | 0.987817 |
| Location | 14,583,061 – 14,583,175 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 71.30 |
| Shannon entropy | 0.46404 |
| G+C content | 0.39554 |
| Mean single sequence MFE | -30.85 |
| Consensus MFE | -20.54 |
| Energy contribution | -19.72 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.29 |
| SVM RNA-class probability | 0.987817 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14583061 114 - 21146708 GCGAU--GACAAAACAUCGUGGAUGAAAAAUCAGCAGAAGAAGCAACUCCACUGAUAGCAUUUGUGCUUAUCAUUGGAAUGUAUGUAUGUAUGCGUAUUUUUUUUUUUUGCUGCAG (((((--(......))))))...........((((((((((((....((((.((((((((....))).))))).))))(((((((....))))))).....))))))))))))... ( -34.30, z-score = -2.84, R) >droSec1.super_1 12090529 93 - 14215200 -------------------GCGAUGAAAAAUCAGCAGAAGAAGCAACUUCACUGAUAGCAUUUGUGUUUAUCAUUGGAAUGUAUGUAUGGGUG-GUGUCUCUUGUUGCUGCAG--- -------------------(((((.....)))(((((((((..((...(((((.((((((((((((.....)))..))))))...))).))))-)))..)))).)))))))..--- ( -24.20, z-score = -0.76, R) >droYak2.chr2R 6522072 114 + 21139217 GCGAU--GACAAACCAUCGUGAAGGAAAAAUCAGCAGAAGAAGCAACUUCACUGAUAACAUUUCUGGUUAUCAUUGGAAUGAAUGCCCAUGUAUGGGUGGUAUUUUUCUGCUCCAG (((((--(......))))))...(((.......(((((((((((...((((.(((((((.......))))))).))))......(((((....))))).)).)))))))))))).. ( -34.81, z-score = -2.80, R) >droEre2.scaffold_4845 8773346 112 - 22589142 GCGAUUAAAAAAAACAUUGUGGAGAAGAAAUCAGCAGAAAAAGCAACUCCACUGAUAACAUUUGUGCUUAUCAUUGGAAUG----CCCAUGUAUGGGUGGUAGUUUUCUGCUGCAG (((((..........)))))...........((((((((((.((...((((.((((((((....)).)))))).))))..(----((((....))))).))..))))))))))... ( -30.10, z-score = -1.85, R) >consensus GCGAU__GACAAAACAUCGUGGAGGAAAAAUCAGCAGAAGAAGCAACUCCACUGAUAACAUUUGUGCUUAUCAUUGGAAUGUAUGCACAUGUAUGGGUGGUAUUUUUCUGCUGCAG ...............................(((((((((((.....((((.((((((((....)).)))))).)))).......((((....)))).....)))))))))))... (-20.54 = -19.72 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:39 2011