Locus 4615

Sequence ID dm3.chr2R
Location 14,574,679 – 14,574,770
Length 91
Max. P 0.887476
window6330 window6331

overview

Window 0

Location 14,574,679 – 14,574,770
Length 91
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 82.53
Shannon entropy 0.32837
G+C content 0.51650
Mean single sequence MFE -33.42
Consensus MFE -23.13
Energy contribution -24.69
Covariance contribution 1.56
Combinations/Pair 1.14
Mean z-score -1.96
Structure conservation index 0.69
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.08
SVM RNA-class probability 0.887476
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 14574679 91 + 21146708
UUCAGGUGGCUGCUGGUGGA--AAGUUG--AAUCAACGGCCAGCUGGAAGGCAUUCAUUCAUGGACGGGGUCCUUCCAAGAUGCCACUUGGUUUC
.(((((((((.((((((...--..((((--...)))).))))))(((((((.((((.((....))..)))))))))))....))))))))).... ( -36.20, z-score =  -2.55, R)
>droAna3.scaffold_13266 15090131 93 - 19884421
UUGAGCUGUCGACUGGAAGGCCAAACUGCGACUCAAUGGGCAUUCGGAAG--UUUCAUUCAUUACCUGGCGCCUUCCAGGAUGACAUUUGACGUU
(..((.(((((.(((((((((......((.(...((((((....(....)--.....))))))...).)))))))))))..)))))))..).... ( -26.40, z-score =  -0.71, R)
>droEre2.scaffold_4845 8764418 91 + 22589142
UUCAGGUGGCUGCUGGUGGA--AAGUUG--AAUCAACGGCCAGCUGGAAGGCAUUCAUUCAUGGACGGGCUCCUUCCAGGAUGCCAUUUAGUUUG
(((((.((((((.((((...--......--.)))).)))))).))))).(((((((.....((((.((...)).))))))))))).......... ( -33.80, z-score =  -1.93, R)
>droYak2.chr2R 6513170 91 - 21139217
UUCAGGUGGCUGCUGGUGGA--AAGUUG--AAUCAACGGCCAGCUGGAAGGCUUUCAUUCAUGGACGGCGCCCUUCCAGGAUGCCGAUUAGUUUG
(((((.((((((.((((...--......--.)))).)))))).)))))(((((((((....))))(((((.((.....)).)))))...))))). ( -31.00, z-score =  -0.66, R)
>droSec1.super_1 12082208 91 + 14215200
UUCAGGUGGCUGUUGGUGGA--AAGUUG--AAUCAACGGCAAGCUGGAAGGCAUUCAUUCAUGGAUGGGGUCCUUCCAGGAUGCCACUUGGUUUC
.((((((((((((((((...--......--.)))))))))...((((((((..((((((....))))))..)))))))).....))))))).... ( -38.10, z-score =  -3.79, R)
>droSim1.chr2R 13280204 91 + 19596830
UUCAGGUGGCUGCUGGUGGA--AAGUUG--AAUCAAUGGCCAGCUGGAAGGCAUUCAUUCAUGGACGGUGUCCUUCCAGGAUGCCACUUGGUUUC
.(((((((((.((((((...--..((((--...)))).))))))(((((((((((..((....)).)))).)))))))....))))))))).... ( -35.00, z-score =  -2.14, R)
>consensus
UUCAGGUGGCUGCUGGUGGA__AAGUUG__AAUCAACGGCCAGCUGGAAGGCAUUCAUUCAUGGACGGGGUCCUUCCAGGAUGCCACUUGGUUUC
(((((.((((((.((((..............)))).)))))).))))).(((((((.....((((.((...)).))))))))))).......... (-23.13 = -24.69 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 14,574,679 – 14,574,770
Length 91
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 82.53
Shannon entropy 0.32837
G+C content 0.51650
Mean single sequence MFE -26.71
Consensus MFE -17.56
Energy contribution -17.70
Covariance contribution 0.14
Combinations/Pair 1.27
Mean z-score -1.95
Structure conservation index 0.66
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.87
SVM RNA-class probability 0.839658
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 14574679 91 - 21146708
GAAACCAAGUGGCAUCUUGGAAGGACCCCGUCCAUGAAUGAAUGCCUUCCAGCUGGCCGUUGAUU--CAACUU--UCCACCAGCAGCCACCUGAA
.....((.(((((....(((((((....(((......)))....)))))))(((((..((((...--))))..--....))))).))))).)).. ( -29.70, z-score =  -2.84, R)
>droAna3.scaffold_13266 15090131 93 + 19884421
AACGUCAAAUGUCAUCCUGGAAGGCGCCAGGUAAUGAAUGAAA--CUUCCGAAUGCCCAUUGAGUCGCAGUUUGGCCUUCCAGUCGACAGCUCAA
.........((((...(((((((((..((.....))....(((--((..(((...(.....)..))).))))).)))))))))..))))...... ( -23.90, z-score =  -0.52, R)
>droEre2.scaffold_4845 8764418 91 - 22589142
CAAACUAAAUGGCAUCCUGGAAGGAGCCCGUCCAUGAAUGAAUGCCUUCCAGCUGGCCGUUGAUU--CAACUU--UCCACCAGCAGCCACCUGAA
.........((((....(((((((....(((......)))....)))))))(((((..((((...--))))..--....))))).))))...... ( -25.30, z-score =  -1.44, R)
>droYak2.chr2R 6513170 91 + 21139217
CAAACUAAUCGGCAUCCUGGAAGGGCGCCGUCCAUGAAUGAAAGCCUUCCAGCUGGCCGUUGAUU--CAACUU--UCCACCAGCAGCCACCUGAA
..........(((....(((((((.(..(((......)))...))))))))(((((..((((...--))))..--....))))).)))....... ( -24.50, z-score =  -0.48, R)
>droSec1.super_1 12082208 91 - 14215200
GAAACCAAGUGGCAUCCUGGAAGGACCCCAUCCAUGAAUGAAUGCCUUCCAGCUUGCCGUUGAUU--CAACUU--UCCACCAACAGCCACCUGAA
.....((.(((((...((((((((....(((......)))....))))))))......((((...--......--.....)))).))))).)).. ( -26.24, z-score =  -3.14, R)
>droSim1.chr2R 13280204 91 - 19596830
GAAACCAAGUGGCAUCCUGGAAGGACACCGUCCAUGAAUGAAUGCCUUCCAGCUGGCCAUUGAUU--CAACUU--UCCACCAGCAGCCACCUGAA
.....((.(((((...((((..((((...)))).(((((.((((((........)).)))).)))--))....--....))))..))))).)).. ( -30.60, z-score =  -3.27, R)
>consensus
GAAACCAAGUGGCAUCCUGGAAGGACCCCGUCCAUGAAUGAAUGCCUUCCAGCUGGCCGUUGAUU__CAACUU__UCCACCAGCAGCCACCUGAA
..........(((....(((((((....(((......)))....)))))))(((((..((((.....))))........))))).)))....... (-17.56 = -17.70 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:38 2011