| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,549,821 – 14,549,883 |
| Length | 62 |
| Max. P | 0.611170 |
| Location | 14,549,821 – 14,549,883 |
|---|---|
| Length | 62 |
| Sequences | 6 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 77.01 |
| Shannon entropy | 0.43252 |
| G+C content | 0.46237 |
| Mean single sequence MFE | -14.17 |
| Consensus MFE | -8.86 |
| Energy contribution | -8.87 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14549821 62 - 21146708 GGUAGCUUUAUAUU-UUCCUGUAUUCCAGCAUACCCCUCCAUUGCUGGGAGCCCAGUUUUCUU (((((((..((((.-.....))))...))).))))........(((((....)))))...... ( -14.70, z-score = -1.90, R) >droSim1.chr2R 13254852 62 - 19596830 GGUAGCUUUAUAUU-UUCCUGUAUUCCAGCAUACCCCUUCAUUGCUGGGAGCCCAGUUUUCUU (((((((..((((.-.....))))...))).))))........(((((....)))))...... ( -14.70, z-score = -1.99, R) >droSec1.super_1 12057364 62 - 14215200 GGUAGCUUUAUAUU-UUCCUGUAUUCCAGCAUACCCCUCCAUUGCUGGGAGCCCAGUUUUCUU (((((((..((((.-.....))))...))).))))........(((((....)))))...... ( -14.70, z-score = -1.90, R) >droYak2.chr2R 6486573 62 + 21139217 AGUUGCCUUAUAUU-AUCCCGAAUUCCAGCAUACCCCUGCAUUGCUGGGAAGCCAGUUCUCCU ..............-........((((((((...........))))))))............. ( -10.90, z-score = -0.22, R) >droEre2.scaffold_4845 8739097 62 - 22589142 AGUUGCCUCAUAUU-AUCCUGGAUUCCAGCAUACCCUUGCAUUGCUAGGAACCCAGUUUUCCU ..............-...((((.((((((((...........)))).)))).))))....... ( -14.30, z-score = -1.99, R) >droAna3.scaffold_13266 15061995 62 + 19884421 GGAAGUUCUUUAUUAACUCCAAAGUCCAGCAUACCCUGGGAGCUCUAGGA-CCUGGUGGAGGU (((.(((.......))))))....((((.((...(((((.....))))).-..)).))))... ( -15.70, z-score = 0.67, R) >consensus GGUAGCUUUAUAUU_AUCCUGUAUUCCAGCAUACCCCUGCAUUGCUGGGAGCCCAGUUUUCUU ..................(((..((((((((...........)))).))))..)))....... ( -8.86 = -8.87 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:34 2011