| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,524,510 – 14,524,605 |
| Length | 95 |
| Max. P | 0.973417 |
| Location | 14,524,510 – 14,524,605 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 68.64 |
| Shannon entropy | 0.58493 |
| G+C content | 0.50706 |
| Mean single sequence MFE | -23.89 |
| Consensus MFE | -13.13 |
| Energy contribution | -13.59 |
| Covariance contribution | 0.46 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.973417 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14524510 95 - 21146708 UGGACGAAGCCACGGCGGAUGAUGAUGAGGUGGAGAAAAAGGAUGAAGAUGGCAAGGCUUCUUCGGAGAAAGAUGAAGAGGAAGCCGAAGAUCCU-------------- .........((((..((........))..))))......(((((.....((((....((((((((........))))))))..))))...)))))-------------- ( -23.20, z-score = -1.77, R) >droSim1.chr2R 13228908 95 - 19596830 UGGACGAAGCCACGGCGGAUGAUGAUGAGGUGGAGAAAAAGGAUGAAGAUGGCAAGGCUUCUUCGGAGAAAGAUGAAGAGGAAGCCGAAGAUCCU-------------- .........((((..((........))..))))......(((((.....((((....((((((((........))))))))..))))...)))))-------------- ( -23.20, z-score = -1.77, R) >droSec1.super_1 12032244 95 - 14215200 UGGACGAAGCCACGGCGGAUGAUGAUGAGGUGGAGAAAAAGGAUGAAGAUGGCAAGGCUUCUUCGGAGAAAGAUGAAGAGGAAGCCGAAGAUCCU-------------- .........((((..((........))..))))......(((((.....((((....((((((((........))))))))..))))...)))))-------------- ( -23.20, z-score = -1.77, R) >droYak2.chr2R 6460086 95 + 21139217 UGGACGAAGCCACCGCGGAUGAUGAUGAGGUGGAGAAAAAGGAUGAAGAUGGCAAGGCUUCUUCGGAGAAAGAUGAAGAGGAAGUUGAAGAUCCU-------------- .........(((((.((........)).)))))......(((((.....(..(((..((((((((........))))))))...)))..))))))-------------- ( -21.30, z-score = -1.26, R) >droEre2.scaffold_4845 8712365 95 - 22589142 UGGACGAAGCCACGGCAGAUGAUGAUGAGGUGGAGAAAAAGGAUGAAGAUGGCAAGGCUUCUUCAGAGAAAGAUGAAGAGGAAGUCGAAGAUCCU-------------- .........((((..((........))..))))......(((((.....((((....((((((((........))))))))..))))...)))))-------------- ( -22.30, z-score = -1.76, R) >droWil1.scaffold_180701 152858 109 - 3904529 UGGUUGAUCUUACCACAGAUGAUGAUGAUGAGAAGAGGAGUAAAGAGAAGAGCAAGCCAGCUGCAGCUGCCUCCUCACCAAAAGCAAAGAAGACUCCACCCCAAAAUAA (((....(((((.((((.....)).)).)))))...(((((...(((.((.(((.((........))))))).)))........(......))))))...)))...... ( -21.20, z-score = -0.46, R) >droVir3.scaffold_12875 9470793 94 + 20611582 CAAGCCA-GCCGCCACCGAGCAAUCCGAGGUGGCUGAUAAACCUGAGCCCCCCAACGCUGAUGCUACCAGUGACGCUGCUGAGGAGGAGCAGACU-------------- ...((((-((((((.(.((....)).).)))))))).....(((.(((....(..(((((.......)))))..)..))).)))....)).....-------------- ( -32.80, z-score = -2.35, R) >consensus UGGACGAAGCCACGGCGGAUGAUGAUGAGGUGGAGAAAAAGGAUGAAGAUGGCAAGGCUUCUUCGGAGAAAGAUGAAGAGGAAGCCGAAGAUCCU______________ .........((((..((........))..))))......(((((.....((((....((((((((........))))))))..))))...))))).............. (-13.13 = -13.59 + 0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:32 2011