| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,228,924 – 3,229,001 |
| Length | 77 |
| Max. P | 0.728202 |
| Location | 3,228,924 – 3,229,001 |
|---|---|
| Length | 77 |
| Sequences | 7 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 66.16 |
| Shannon entropy | 0.67229 |
| G+C content | 0.38441 |
| Mean single sequence MFE | -16.91 |
| Consensus MFE | -6.03 |
| Energy contribution | -7.30 |
| Covariance contribution | 1.27 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.728202 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3228924 77 - 23011544 AGCCGCAUAAUGUUAGAUAGCAAAUGAACACGAAGCCUUAUGUAACAUUUGUUAUCGG--CCUGUUUG-UUUGGCUUUGC (((((.((((.....(((((((((((.(((..(....)..)))..)))))))))))..--.....)))-).))))).... ( -20.10, z-score = -1.52, R) >droPer1.super_10 292142 64 - 3432795 --------AAUGUUA---CGCGAA--AAUAGUAACCCAAAUAAAACAUUGUUUAUUUG--GGGAUCUA-UUUGGAUAAGC --------.......---.((..(--(((((...((((((((((......))))))))--))...)))-)))......)) ( -16.60, z-score = -3.43, R) >droEre2.scaffold_4929 3265919 77 - 26641161 AGCCCCAUAAUGUCAGAUAGCAAAUGAACACGAAGCCUUACGUAACAUUUGUUAUCGGG--GUGUUUA-UUUGACUUUGC .(((((.........(((((((((((...(((........)))..))))))))))))))--)).....-........... ( -20.20, z-score = -2.25, R) >droYak2.chr2L 3218153 80 - 22324452 AGCCCCAUAAUAUUAGAUAGCAAAUGAACACGAAGCCUUAUGUAACAUUUGUUAUCGGGUUGUGUUCAUUUUAGCUUUGC ..................((((((((((((((..((((...(((((....))))).)))))))))))))))..))).... ( -20.20, z-score = -2.56, R) >droSec1.super_5 1378405 77 - 5866729 AGCCGCAUAAUGUUAGAUAGCAAAUGAUCACGAAGCCUUAUGUAACAUUUGUUAUCGG--CCUGUUUG-UUUGACUUUGU .(((((.....))..(((((((((((..((..(....)..))...)))))))))))))--).......-........... ( -16.30, z-score = -0.89, R) >droSim1.chr2L 3168042 77 - 22036055 AGCCGCCUAAUGUUAGAUAGCAAAUGAACACGAAGCCUUAUGUAACAUUUGUUAUCGG--UGUGUUUG-UUUGACUUUGC (((((((........(((((((((((.(((..(....)..)))..)))))))))))))--)).)))..-........... ( -16.00, z-score = -0.67, R) >droMoj3.scaffold_6500 25178928 63 - 32352404 --------------AGCCUAAGAAUGCUCGUUCAGUUUCCAGGAUAUUUUGUAGUCAG--UCUGUUUACUCUGGCCUGC- --------------.(((...((((....))))(((...((((..(((....)))...--))))...)))..)))....- ( -9.00, z-score = 1.18, R) >consensus AGCCGCAUAAUGUUAGAUAGCAAAUGAACACGAAGCCUUAUGUAACAUUUGUUAUCGG__UGUGUUUA_UUUGGCUUUGC ...............(((((((((((...(((........)))..)))))))))))........................ ( -6.03 = -7.30 + 1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:19 2011