| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,512,522 – 14,512,596 |
| Length | 74 |
| Max. P | 0.734900 |
| Location | 14,512,522 – 14,512,596 |
|---|---|
| Length | 74 |
| Sequences | 6 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 64.35 |
| Shannon entropy | 0.70167 |
| G+C content | 0.40836 |
| Mean single sequence MFE | -13.59 |
| Consensus MFE | -5.93 |
| Energy contribution | -5.68 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.45 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14512522 74 - 21146708 GGAUUCGACCUAAGUAUGGAAAACUGUACUUAUCGAUAAGUUAUCUUCUCAUUGGUCUAUCGCCAUCGAGAGCU ....((((..(((((((((....))))))))))))).........(((((..((((.....))))..))))).. ( -18.90, z-score = -1.79, R) >droSim1.chr2R 13216884 56 - 19596830 ------------------GUUUCCGUAACUUAUCGAUAAGUUUUUUUCUUUUUGGCUUAUCGCCAUCGAGAGCU ------------------........((((((....))))))...(((((..((((.....))))..))))).. ( -11.40, z-score = -1.89, R) >droSec1.super_1 12020184 74 - 14215200 GUUUCCGACUUAAGCAUGGAGAACUGUACUUAUCGAUAAGUUUUUUUGUUUUUGGCUUAUCGCCAUCGAGAGCU (((..(((...(((((.((((((((.............))))))))))))).((((.....)))))))..))). ( -16.92, z-score = -1.27, R) >droYak2.chr2R 6448008 74 + 21139217 GUAUCCGACAUAAGCAUAGUCAACUAUACUAAUCGAUAAGUUUUCUUGUUGUUGGCUUAUCGCCAUCGAGAGCU ...(((((....((.((((....)))).))...(((((((((..(.....)..)))))))))...))).))... ( -15.10, z-score = -1.05, R) >droEre2.scaffold_4845 8700137 64 - 22589142 -------GUGUCCGCUU---CAACCAUACUUAUCGAUAAGUUCUCCUGUUGUUGGUUUAUCGCCAUCGAGAGCU -------......((((---((((...(((((....)))))......)))).((((.....))))....)))). ( -9.50, z-score = 0.19, R) >droAna3.scaffold_13266 13357807 67 + 19884421 ----CUUAUAUAGGAAAGUUCAACUGUA-GGGUCGAUAAAAGCUCUCCACCU--GCCUAUCGCCAUCGAAUUCU ----....(((((..........)))))-.((.(((((...((.........--)).))))))).......... ( -9.70, z-score = 0.40, R) >consensus ____CCGACAUAAGCAUGGUCAACUGUACUUAUCGAUAAGUUUUCUUCUUGUUGGCUUAUCGCCAUCGAGAGCU ......................................(((((((.......((((.....))))..))))))) ( -5.93 = -5.68 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:26 2011