| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,506,838 – 14,506,932 |
| Length | 94 |
| Max. P | 0.554765 |
| Location | 14,506,838 – 14,506,932 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 69.75 |
| Shannon entropy | 0.57876 |
| G+C content | 0.44793 |
| Mean single sequence MFE | -26.44 |
| Consensus MFE | -12.18 |
| Energy contribution | -11.82 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554765 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14506838 94 - 21146708 ------------GCCAGCGUCGCCU---UUUGUCACUCGAAUUGCGUUUUGAGUGGUU--AACCGGGG-UUU---GCUGGCCAA--GAUCUUCAUAAAUUGGUGAAAGAUACCCAAA ------------(((((((..((((---((..(((((((((......)))))))))..--))...)))-).)---))))))...--.((((((((......))).)))))....... ( -30.60, z-score = -2.19, R) >droSim1.chr2R 13210974 94 - 19596830 ------------GCCAGCGUCGCUU---UUUGUCACUCGAAUUGCGUUUUGAGUGGUU--AACCGGGG-UUU---GCUGGCCAA--GAUCUUCAUAAAUUGGUGAAAGAUACCCAAA ------------(((((((.(.((.---((..(((((((((......)))))))))..--))..)).)-..)---))))))...--.((((((((......))).)))))....... ( -28.20, z-score = -1.50, R) >droSec1.super_1 12014575 94 - 14215200 ------------GCCAGCGUCGCUU---UUUGUCACUCGAAUUGCGUUUUGAGUGGUU--AACCGGGG-UUU---GCUGGCCAA--GAUCUUCAUAAAUUGGUGAAAGAUACCCAAA ------------(((((((.(.((.---((..(((((((((......)))))))))..--))..)).)-..)---))))))...--.((((((((......))).)))))....... ( -28.20, z-score = -1.50, R) >droYak2.chr2R 6442410 95 + 21139217 ------------GCCAGCGUCGUUU---UUUGUCACUCGAAUUGCGUUUUGAGUGGUU--ACCCGGGGUUUU---GCUGGCCAA--GAUCUUCAUAAAUUGGUGAAAGAUACCCAAA ------------(((((((......---....(((((((((......)))))))))..--(((...)))..)---))))))...--.((((((((......))).)))))....... ( -26.10, z-score = -0.95, R) >droEre2.scaffold_4845 8694538 94 - 22589142 ------------GCCAGCGUCGUUU---UUUGUCACUCGAAUUGCGUUUUGAGUGGAU--ACCCGGGG-UUU---GCUGGCCAA--GAUCUUCAUAAAUUGGUGAAAGAUACCCAAA ------------((((((((((..(---....(((((((((......)))))))))..--)..)))..-..)---))))))...--.((((((((......))).)))))....... ( -26.60, z-score = -1.06, R) >droAna3.scaffold_13266 13352300 93 + 19884421 ------------GCCGGCGUCGAUU---UUUGUCACUCGAAUUGCGUUUUGAGCCG----AAAGGGGCCUUU---GCUGGCCAA--GAUCUCCAUAAAUUGGUGAAAGAUAUCCAAA ------------((((((((((((.---...))).((((((......))))))((.----...)))))....---))))))...--..((.(((.....))).))............ ( -25.80, z-score = -0.49, R) >dp4.chr3 11061906 106 + 19779522 GCCGGCGUCGUCGACGCUGCCGACG--AAAUGUCGCUCGAAUUGCGUUUUGAGUGA----AAAUGAUGUUUU---UCAGGCCGU--CAUUUCCAUAAAUUGGUGAAAGAUAUCCACA (.(((((((...))))))).)....--.....(((((((((......)))))))))----....((((((((---((..((((.--.............)))))))))))))).... ( -31.04, z-score = -0.85, R) >droPer1.super_4 4561653 105 + 7162766 GCCGGCGUCGUCG-CGCUGCCGACG--AAAUGUCGCUCGAAUUGCGUUUUGAGUGA----AAAUGAUGUUUU---UCAGGCCGU--CAUUUCCAUAAAUUGGUGAAAGAUAUCCACA ..((...((((((-......)))))--)..))(((((((((......)))))))))----....((((((((---((..((((.--.............)))))))))))))).... ( -29.44, z-score = -0.32, R) >droWil1.scaffold_180700 5415991 90 - 6630534 ---------GUCGGAGUUGCCCGUUCAAAUUGUCACUCAAAUUGCGUUUUGAGUCA----AAAUG------------UAGCCGA--CAUUUCCAUAAAUUGGUGACUACCUGUUGCU ---------...(((((..((.(((.........(((((((......)))))))..----(((((------------(.....)--))))).....))).))..))).))....... ( -19.70, z-score = -0.87, R) >droVir3.scaffold_12875 529480 92 - 20611582 -------------------CCGUCG---CAUGUCACUCAAAUUGCGUUUUGAGUGAAA--AACUGACGUUUU-GCAUGGGCCAACGGAUUCCCAUAAAUUGGUGAAAGAUACCAAAA -------------------.(((((---....(((((((((......)))))))))..--...)))))....-..(((((((...))...)))))...((((((.....)))))).. ( -25.90, z-score = -1.99, R) >droMoj3.scaffold_6496 3530444 95 - 26866924 -------------------CCAAAG---CAUUUCACUCAAAUUGCGUUUUGAGUGAAACGAAGUGACGUUUUGGUAUGGGCCAACGGAUUCACAUAAAUUGGUGAAAGAUAUCCAAA -------------------((((((---(.(((((((((((......))))))))))).(......))))))))...........((((((((........)))).....))))... ( -25.20, z-score = -1.92, R) >droGri2.scaffold_15245 7892935 94 + 18325388 -------------------CCGGUG---AGUGUCACUCAAAUUGCGUUUUGAGUGGAAAAGAGUGACGUUUU-GCAUGGGCCAACGGAUUUCCAUAAAUUGGUGAAAGAUACCUAAA -------------------(((((.---.((((((((((((......)))))))))....(((...((((..-((....)).))))...))))))..)))))............... ( -20.50, z-score = 0.15, R) >consensus ____________GCCAGCGCCGAUU___UUUGUCACUCGAAUUGCGUUUUGAGUGG_U__AACUGGGGUUUU___GCUGGCCAA__GAUCUCCAUAAAUUGGUGAAAGAUACCCAAA ................................(((((((((......))))))))).......................(((((...((....))...))))).............. (-12.18 = -11.82 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:25 2011