| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,499,268 – 14,499,375 |
| Length | 107 |
| Max. P | 0.833470 |
| Location | 14,499,268 – 14,499,375 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 95.62 |
| Shannon entropy | 0.06008 |
| G+C content | 0.44827 |
| Mean single sequence MFE | -28.83 |
| Consensus MFE | -27.27 |
| Energy contribution | -27.60 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.833470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14499268 107 + 21146708 UCAGAGUGAACUGACUUACUUGAAAGACACUCAAGUCGGAAGACCCGAGCACGAAGUCACCUCAUACACAAAUAAUGGGGGGAUUCGAAUACAAGUUCUCUCUCUCU ..((((.(((((.................(((..(((....)))..)))..((((..(.((((((.........)))))))..))))......))))).)))).... ( -29.50, z-score = -1.60, R) >droSim1.chr2R 13203484 106 + 19596830 UCAGAGUGAACUGACUUACUUGAAAGACACUCAAGUCGGAAGACCCGAGCACGAAGUCGCCUCAUACACAAAUAAUGGGGGUAUUCGAAUACAAGUUCUCUCUCUC- ..((((.((((((((((.(((((.......)))))((((.....)))).....))))).((((((.........))))))((((....)))).))))).))))...- ( -29.60, z-score = -1.85, R) >droSec1.super_1 11952865 106 + 14215200 UCAGAGUGAACUGACUUACUUGAAAGACACUCAAGUCGGAAGACCAGAGCACGAAGUCGCCUCAUACACAAAUAUUGGGGGUAUUCGAAUACAAGUUCCCUCUCUA- ..((((.((((((((((..((....))..(((..(((....)))..)))....))))).(((((...........)))))((((....)))).))))).))))...- ( -27.40, z-score = -1.28, R) >consensus UCAGAGUGAACUGACUUACUUGAAAGACACUCAAGUCGGAAGACCCGAGCACGAAGUCGCCUCAUACACAAAUAAUGGGGGUAUUCGAAUACAAGUUCUCUCUCUC_ ..((((.(((((.................(((..(((....)))..)))..((((..(.((((((.........)))))))..))))......))))).)))).... (-27.27 = -27.60 + 0.33)
| Location | 14,499,268 – 14,499,375 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 95.62 |
| Shannon entropy | 0.06008 |
| G+C content | 0.44827 |
| Mean single sequence MFE | -30.60 |
| Consensus MFE | -28.20 |
| Energy contribution | -28.87 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14499268 107 - 21146708 AGAGAGAGAGAACUUGUAUUCGAAUCCCCCCAUUAUUUGUGUAUGAGGUGACUUCGUGCUCGGGUCUUCCGACUUGAGUGUCUUUCAAGUAAGUCAGUUCACUCUGA ....((((.(((((.......(((..(((.((.....)).(((((((....).))))))..)))..))).((((((..((.....))..))))))))))).)))).. ( -31.40, z-score = -1.50, R) >droSim1.chr2R 13203484 106 - 19596830 -GAGAGAGAGAACUUGUAUUCGAAUACCCCCAUUAUUUGUGUAUGAGGCGACUUCGUGCUCGGGUCUUCCGACUUGAGUGUCUUUCAAGUAAGUCAGUUCACUCUGA -...((((.(((((.......(((.((((.((.....)).((((((((...))))))))..)))).))).((((((..((.....))..))))))))))).)))).. ( -31.40, z-score = -1.48, R) >droSec1.super_1 11952865 106 - 14215200 -UAGAGAGGGAACUUGUAUUCGAAUACCCCCAAUAUUUGUGUAUGAGGCGACUUCGUGCUCUGGUCUUCCGACUUGAGUGUCUUUCAAGUAAGUCAGUUCACUCUGA -((((((((...((..(((.((((((.......)))))).)))..))....))))(((..((((.(((...(((((((.....))))))))))))))..))))))). ( -29.00, z-score = -0.96, R) >consensus _GAGAGAGAGAACUUGUAUUCGAAUACCCCCAUUAUUUGUGUAUGAGGCGACUUCGUGCUCGGGUCUUCCGACUUGAGUGUCUUUCAAGUAAGUCAGUUCACUCUGA ....((((.(((((.......(((.((((.((.....)).(((((((....).))))))..)))).))).((((((..((.....))..))))))))))).)))).. (-28.20 = -28.87 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:24 2011