| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,493,572 – 14,493,684 |
| Length | 112 |
| Max. P | 0.512085 |
| Location | 14,493,572 – 14,493,684 |
|---|---|
| Length | 112 |
| Sequences | 7 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 65.66 |
| Shannon entropy | 0.61502 |
| G+C content | 0.32337 |
| Mean single sequence MFE | -20.43 |
| Consensus MFE | -7.42 |
| Energy contribution | -6.27 |
| Covariance contribution | -1.15 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.512085 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14493572 112 - 21146708 UAUAGUCUACUAUUAAUGCGAAAAAUU-UCCGCGUUGCCUUUAGUUCCCUCUUUUGUUGUUUCGAAAGUGAAUUCAAACGGUUGAAGUUUAU----AUAAUUUCCAUACAAUGGCAA--- .((((....)))).((((((.......-..))))))(((...(((((...((((((......)))))).)))))......((.((((((...----..))))))...))...)))..--- ( -19.00, z-score = -0.76, R) >droPer1.super_4 4547089 98 + 7162766 ----------------CGUGGACCAUUGUUUAUAUACAAAUGA--UUACGUAUCACUUGUUGGAACAGUACUUAUUAUCAAUAGAAAUUUAU----ACAAUUUCCAUCCAAUUAGAGCUA ----------------..((((..(((((((....((((.(((--(.....)))).))))..)))))))..............((((((...----..))))))..)))).......... ( -16.40, z-score = -0.97, R) >dp4.chr3 11047376 98 + 19779522 ----------------CGUGGAUCAUUGUUUAUAUAGAAAUGA--UUACGUAUCACUUGUUGGAACAGUACUUAUUAUCAAUAGAAAUUUAU----ACAAUUUCCAUCCAAUUAGAGCUA ----------------((((.((((((...........)))))--))))).....((.((((((........(((.....)))((((((...----..))))))..)))))).))..... ( -13.50, z-score = 0.35, R) >droEre2.scaffold_4845 8681127 116 - 22589142 UAUCGCUUACUAUUAAUGCGAAAAAUU-UCCGCAUUGCCUUUAGUUCUCACUUUUGUUGUUUAGAAAGCGAAUUCAAACGGUGGAAGUUUACGUAUAUAAUUUCCAUACAAUAGCAA--- ..((((((((((.(((((((.......-..)))))))....))))(((.((.......))..))))))))).........(((((((((.........)))))))))..........--- ( -22.70, z-score = -1.42, R) >droYak2.chr2R 6429119 116 + 21139217 UAUCGUUCACUAUUAUUGCAAAAAGUU-UCCGCAUUGGCUUUAGUUCUCUCUUUUGUUGUUUCGAAAGUGAAUUCAAACGGUGGAAGUUUAUGUACAUAAUUUCCAUACAAUAGCAA--- ....((.....(((((((((.(((.((-(((((.((((.....((((...((((((......)))))).))))))))...)))))))))).)))).)))))......))........--- ( -20.30, z-score = -0.66, R) >droSec1.super_1 11947124 112 - 14215200 UAUCGUCUACUAUUAAUGCGAAAAAUU-UCCGCAUUGUCUUCAGCUCCCACUUUUGUUGUUUCGAAAGUGAAUUCAAACGGUGGAAGUUUAU----AUAAUUUCCAUACAAUAGCAA--- .............(((((((.......-..)))))))......(((..((((((((......))))))))..........(((((((((...----..))))))))).....)))..--- ( -26.10, z-score = -3.32, R) >droSim1.chr2R 13197730 98 - 19596830 --------------AAUGCGAAAUAUU-UCCGCAUUGCCUUCAGCUCCCACUUUUGUUGUUUCGAAAGUGAUUUCAAACGGUGGAAGUUUAU----AUAAUUUCCAUACAAUAGCAA--- --------------((((((.......-..)))))).......(((..((((((((......))))))))..........(((((((((...----..))))))))).....)))..--- ( -25.00, z-score = -3.34, R) >consensus UAU_G___ACUAUUAAUGCGAAAAAUU_UCCGCAUUGCCUUUAGUUCCCACUUUUGUUGUUUCGAAAGUGAAUUCAAACGGUGGAAGUUUAU____AUAAUUUCCAUACAAUAGCAA___ .................(((..........)))................(((((..((((((.(((......)))))))))..)))))................................ ( -7.42 = -6.27 + -1.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:23 2011