| Sequence ID | dm3.chr2L |
|---|---|
| Location | 370,176 – 370,231 |
| Length | 55 |
| Max. P | 0.540482 |
| Location | 370,176 – 370,231 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 96.36 |
| Shannon entropy | 0.05009 |
| G+C content | 0.52121 |
| Mean single sequence MFE | -15.33 |
| Consensus MFE | -14.28 |
| Energy contribution | -13.83 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.540482 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 370176 55 - 23011544 GGAGAACUCAAUCACCUUGCCAUUGGGUAACCUCACCGUACUGAGGUUUACUUCC ((((.(((((((.........)))))))(((((((......)))))))..)))). ( -14.40, z-score = -1.42, R) >droSim1.chr2L 376368 55 - 22036055 GGAGAACGCAAUCACCUUGCCAUUGGGUGACCUCACCGUACUGAGGUUCACUUCC ((((.......((((((.......))))))(((((......)))))....)))). ( -15.80, z-score = -1.22, R) >droSec1.super_14 353462 55 - 2068291 GGAGAACUCAAUCACCUUGCCAUUGGGUGACCUCACCGUACUGAGGUUCACUUCC ((((.......((((((.......))))))(((((......)))))....)))). ( -15.80, z-score = -1.23, R) >consensus GGAGAACUCAAUCACCUUGCCAUUGGGUGACCUCACCGUACUGAGGUUCACUUCC ((((..........((........))(((((((((......))))).)))))))) (-14.28 = -13.83 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:36 2011