| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,423,134 – 14,423,234 |
| Length | 100 |
| Max. P | 0.588484 |
| Location | 14,423,134 – 14,423,234 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 50.64 |
| Shannon entropy | 0.70348 |
| G+C content | 0.29546 |
| Mean single sequence MFE | -23.47 |
| Consensus MFE | -5.79 |
| Energy contribution | -4.49 |
| Covariance contribution | -1.31 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588484 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14423134 100 + 21146708 --UAUUUGGCCUAUUUGUUAUGAAGUUGAAUUAAGCUUGAAGUUUUAAAUUAGAGUUGGCAAGCGU---UUUAAUUUAACAUUAUAAAUAACACUGCUACCAAAU --.((((((......((((((.(((((((((((((((((.(..((((...))))..)..)))))..---.)))))))))).))....))))))......)))))) ( -20.10, z-score = -1.41, R) >droAna3.scaffold_13266 13281989 105 - 19884421 UAUUUUGAGGGGAAAGUCUAUAUCUUAUCGACUUGAUUGAAUUCGAUAAUUGUGAUAAAAUAUAAAAGAGGCUAUAUAUAAUUUUAUGUGGUAUUUCUUUCACAA .....(((((((((....(((((.((((((.....((((....)))).....)))))).)))))......((((((((......)))))))).)))))))))... ( -23.50, z-score = -2.51, R) >droEre2.scaffold_4845 8625865 103 + 22589142 -GUAUUUAGCUGACUUGCUAUGCAGUUUACGUUUGCCUGAAGUCUCAAAUUAGAGCUGGCAAGCGUCAAUUUGGUGUAAUAUUAGAAAUAACACUGCUAA-AAAU -...((((((((((((((...)))).....(((((((...((.(((......))))))))))))))))....(((((.((.......)).))))))))))-)... ( -26.80, z-score = -1.69, R) >consensus __UAUUUAGCCGAAUUGCUAUGAAGUUUAAAUUUGCUUGAAGUCUAAAAUUAGAGUUGGCAAGCGU__AUUUAAUAUAAAAUUAUAAAUAACACUGCUAACAAAU ......((((...(((((((.....(((((((((.....)))))))))........)))))))..........(((((......)))))......))))...... ( -5.79 = -4.49 + -1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:13 2011