| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,368,465 – 14,368,558 |
| Length | 93 |
| Max. P | 0.723275 |
| Location | 14,368,465 – 14,368,558 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 79.61 |
| Shannon entropy | 0.41149 |
| G+C content | 0.46517 |
| Mean single sequence MFE | -26.57 |
| Consensus MFE | -18.17 |
| Energy contribution | -19.70 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14368465 93 - 21146708 AUUCAUGCAAAUUGCUUGCUCACUG-CCAAAUGCGUUCGAUCACGUAG-UUGAUUACAGGAAACUGGCCAGAAUCGAGCGUUGGCAAUUUGGUGC-- ...(((.((((((((((((((....-.(((.(((((......))))).-)))....(((....))).........)))))..)))))))))))).-- ( -29.40, z-score = -1.68, R) >droSim1.chr2R_random 2604723 93 - 2996586 AUUCAUGCAAAUUGCUUGCUCGCUG-CCAAAUGCGUUCGAUUACGUAG-UUGAUUACAGGAAACUGGCCAGAAUCGAGCGUUGGCAAUUUGGUGC-- ...(((.((((((((((((((((((-.(((.(((((......))))).-)))....(((....)))..)))...))))))..)))))))))))).-- ( -32.20, z-score = -2.44, R) >droSec1.super_1 11844814 93 - 14215200 AUUCAUGCAAAUUGCUUGCUCGCUG-CCAAAUGCGUUCAUUCACGUAG-UUGAUUACAGGAAACUGGCCAGAAUCGAGCGUUGCCAAUUUGGUGC-- ...(((.((((((((.(((((((((-.(((.(((((......))))).-)))....(((....)))..)))...))))))..).)))))))))).-- ( -27.40, z-score = -1.03, R) >droYak2.chr2R 6321256 93 + 21139217 AUUCAUGCAAAUUGCUUGCUCACUG-CCAAAUGCGUUCGAUCACGUAG-UUGAUUACAGGAAGCUGGCCAGAAACGAGCGUUGGCAAUUUGGUGU-- ...(((.((((((((((((((....-.(((.(((((......))))).-)))....(((....))).........)))))..)))))))))))).-- ( -27.10, z-score = -0.62, R) >droEre2.scaffold_4845 8576398 93 - 22589142 AUUCAUGCAAAUUGCUUGCUCACUGCCCAAAUGCGUUCGAUCACGUAG-UUGAUUACAGGAAACUGGGCA-AAACGAGCGUUGGCAAUUUGGUGC-- ...(((.((((((((((((((..(((((((.(((((......))))).-)))....(((....)))))))-....)))))..)))))))))))).-- ( -33.30, z-score = -3.06, R) >droAna3.scaffold_13266 13204590 89 + 19884421 ----AUGCAAAUUGCUUUCUCACUU-CCUAAUGCGUCCGAGCACGUGG-CUGAUUACAGGAAACAGUCCGCAAUCGAACGUUGGCAAUUUGGGGC-- ----.(.(((((((((.........-......((((.(((...((.((-(((.((.....)).)))))))...))).)))).))))))))).)..-- ( -23.19, z-score = -0.19, R) >droWil1.scaffold_181141 1991115 80 + 5303230 AUGCAUGCAAAUUGCUU-----CGAGCUAGACAC--------ACGUAGCCUGAUUACAGGAAACAUUC----AACGAAAGGCAACGAUUUGACUCCC ..(((.......)))..-----.(((.((((...--------.(((.((((.......(....).(((----...))))))).))).)))).))).. ( -13.40, z-score = -0.03, R) >consensus AUUCAUGCAAAUUGCUUGCUCACUG_CCAAAUGCGUUCGAUCACGUAG_UUGAUUACAGGAAACUGGCCAGAAUCGAGCGUUGGCAAUUUGGUGC__ .......((((((((((((((..........(((((......))))).........(((....))).........)))))..)))))))))...... (-18.17 = -19.70 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:09 2011