| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,356,871 – 14,356,971 |
| Length | 100 |
| Max. P | 0.941775 |
| Location | 14,356,871 – 14,356,971 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 82.73 |
| Shannon entropy | 0.31355 |
| G+C content | 0.45838 |
| Mean single sequence MFE | -26.90 |
| Consensus MFE | -18.08 |
| Energy contribution | -19.17 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.941775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14356871 100 + 21146708 UUUGACAUG----UAAACGGAAGAC---UGUCUGUUUGAUUGCCAAAUUA-CCAGGCAAUUAAGAGCAGCCAAACGCUGAGCUCCACUGAUUGCCUUCCCCACGCCCC ((((.((..----((((((((....---..))))))))..)).))))...-..(((((((((.(((((((.....)))..))))...)))))))))............ ( -26.40, z-score = -2.66, R) >droAna3.scaffold_13266 13193702 100 - 19884421 UUUGGCAUGACUGCCAACGGAAAGCGGUUGUCAGUUUGAUUUCCAAAUUAGCCAGGCAAUUAAGAGCGGCUCAUGGCCGAA----ACUGAUUGCAUUUCCAGCU---- .((((((....)))))).(((((..(((((...(((((.....))))))))))..(((((((....((((.....))))..----..))))))).)))))....---- ( -33.50, z-score = -2.03, R) >droEre2.scaffold_4845 8564722 92 + 22589142 UUUGACAUG----UAAACGGAAGAC---CGUCUGUUUGAUUGCCAAAUUA-CCAGGCAAUUAAGAGCAGCCAAAUGCUGAGCUCCACUGAUUGCCUUUCC-------- ((((.((..----((((((((....---..))))))))..)).))))...-..(((((((((.(((((((.....)))..))))...)))))))))....-------- ( -26.30, z-score = -2.92, R) >droYak2.chr2R 6309866 92 - 21139217 UUUGACAUG----UAAACGGAAGAC---GGUCUGUUUGAUUGCCAAAUUA-CGAGGCAAUUAAAAGCAGCCCAAUGCUGAGCUCCACUGAUUGCCAUUCC-------- ((((.((..----((((((((....---..))))))))..)).))))...-...((((((((..((((((.....)))..)))....)))))))).....-------- ( -22.80, z-score = -1.32, R) >droSec1.super_1 11833534 99 + 14215200 UUUGACAUG----UAAACGGAAGAC---UGUCUGUUUGAUUGCCAAAUUA-CCAGGCAAUUAAGAGCAGCCAAAUGCUGAGCUCCACUGAUUGCCAUUUCGACCUCC- ((((.((..----((((((((....---..))))))))..)).))))...-...((((((((.(((((((.....)))..))))...))))))))............- ( -26.20, z-score = -2.31, R) >droSim1.chr2R 13082149 99 + 19596830 UUUGACAUG----UAAACGGAAGAC---UGUCUGUUUGAUUGCCAAAUUA-CCAGGCAAUUAAGAGCAGCCAAAUGCUGAGCUCCACUGAUUGCCAUUUCGACCCCC- ((((.((..----((((((((....---..))))))))..)).))))...-...((((((((.(((((((.....)))..))))...))))))))............- ( -26.20, z-score = -2.67, R) >consensus UUUGACAUG____UAAACGGAAGAC___UGUCUGUUUGAUUGCCAAAUUA_CCAGGCAAUUAAGAGCAGCCAAAUGCUGAGCUCCACUGAUUGCCAUUCC_AC_____ ((((.((......((((((((.........))))))))..)).)))).......((((((((.(((((((.....)))..))))...))))))))............. (-18.08 = -19.17 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:08 2011