| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,314,086 – 14,314,183 |
| Length | 97 |
| Max. P | 0.722479 |
| Location | 14,314,086 – 14,314,183 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 74.15 |
| Shannon entropy | 0.45943 |
| G+C content | 0.38856 |
| Mean single sequence MFE | -24.39 |
| Consensus MFE | -11.16 |
| Energy contribution | -11.94 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.722479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14314086 97 + 21146708 ----AAUUAAAUUACAUAGUUUUAUACAACUGAAAGCGG-CUGGCCAGCCGCAUAAAGUAUUC--GCCUAC--------ACCAGCAUUGUUCUAAAUGCUAAAAAGUUUAUU- ----...((((((((.(((((......)))))...((((-((....)))))).....))....--......--------...((((((......))))))....))))))..- ( -20.90, z-score = -1.59, R) >droPer1.super_4 6969686 112 + 7162766 AAUUAAUUAAAU-AUAUAGUUUUAUAGAGCGGAAACUGGUCCCGUCCCGAGAACAGAACAGGCCAGACCAGGCAUCGAGUACGGCAUUGUUCUAAAUGCCGAUUAGCUUCCCU ............-.....((((....))))((((.((((((..(((..............)))..))))))((....(((.(((((((......)))))))))).)))))).. ( -26.94, z-score = -1.30, R) >dp4.chr3 11570673 112 + 19779522 AAUUAAUUAAAU-AUAUAGUUUUAUAGAGCGGAAACUGGUCCCGUCCCCAGAAAAGAACAGGCCAGACCAGGCAACGAGUUCGGCAUUGUUCUAAAUGCCGAUUAGCUUCCCU ............-.....((((....))))((((.((((((..............((((..(((......))).....))))((((((......)))))))))))).)))).. ( -28.20, z-score = -1.94, R) >droEre2.scaffold_4845 8522005 97 + 22589142 ----AAUUAAAUUACAUAGUUUUAUACAACGGAAAGCGG-CUGGCCAGCCGCAGAAAGUAUUC--GCCUAC--------ACCAGCAUUGUUCUAAAUGCUGAAAAGUUUAUU- ----...((((((.................((...((((-((....)))))).(((....)))--.))...--------..(((((((......)))))))...))))))..- ( -23.90, z-score = -2.01, R) >droYak2.chr2R 6266541 100 - 21139217 ----AAUUAAAUUACAUAGUUUUAUACACCGGAUAGCGG-CUGGCCAGCCGCAGCAAGUAUUCUCGCCUACC-------AGCAGCAUUGUUCUAAAUGCUGAAAAGUUUAUU- ----...((((((.................((...((((-((....)))))).((.((....)).))...))-------..(((((((......)))))))...))))))..- ( -26.00, z-score = -1.78, R) >droSec1.super_1 11790914 94 + 14215200 -------UAAAUUACAUAGUUUUAUACAACUGAAAGCGG-CUAGUCAGCCGCAUAAAGUAUUC--GCCUAC--------ACCAGCAUAGUUCUAAAUGCUGAAAAGUUUAUU- -------.....(((.(((((......)))))...((((-((....)))))).....)))...--......--------..((((((........))))))...........- ( -20.90, z-score = -2.20, R) >droSim1.chr2R 13050847 97 + 19596830 ----AAUUAAAUUACAUAGUUUUAUACAACUGAAAGCGG-CUGGCCAGCCGCAUAAAGUAUUC--GCCUAC--------ACCAGCAUUGUUCUAAAUGCUGAAAAGUUUAUU- ----...((((((((.(((((......)))))...((((-((....)))))).....))....--......--------..(((((((......)))))))...))))))..- ( -23.90, z-score = -2.41, R) >consensus ____AAUUAAAUUACAUAGUUUUAUACAACGGAAAGCGG_CUGGCCAGCCGCAUAAAGUAUUC__GCCUAC________ACCAGCAUUGUUCUAAAUGCUGAAAAGUUUAUU_ ...........................(((.....((((.((....)))))).............................(((((((......)))))))....)))..... (-11.16 = -11.94 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:03 2011