| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,310,528 – 14,310,631 |
| Length | 103 |
| Max. P | 0.900941 |
| Location | 14,310,528 – 14,310,631 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 79.78 |
| Shannon entropy | 0.33148 |
| G+C content | 0.54758 |
| Mean single sequence MFE | -29.10 |
| Consensus MFE | -24.60 |
| Energy contribution | -25.04 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.900941 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14310528 103 + 21146708 GAACCACCACAAACCAGCUGCGAUCGCAUGGGGAGAGGAAUUUAUGUGGAACGCGGCGGGCCAAGAACUGAAAGCUCAGCAAAGAACGAUCGAAGUGGCUGAA ....((((((...((.((((((.(((((((((........)))))))))..)))))).)).......((((....))))...............)))).)).. ( -28.40, z-score = -0.67, R) >droSim1.chr2R 13047280 103 + 19596830 GAACCUCCACAAACCCGCUGCGAUCGCAUGGGGAGGGGAAUUUAUGUGGAACGCGGCGGGCAAAGAACUGAAAGCUCAGCAAAGAACGAUCGAAGUGGCUGAA ......((((...(((((((((.(((((((((........)))))))))..))))))))).......((((....))))...............))))..... ( -33.10, z-score = -1.48, R) >droSec1.super_1 11787439 103 + 14215200 GAACCACCACAAACCCGCCGCGAUCGCAUGGGGAGGGGAAUUUAUGUGGAACGCGGCGGGCAAAGAACUGAAAGCUCAGCAAAGAACGAUCAAAGUGGCUAAG ......((((...(((((((((.(((((((((........)))))))))..))))))))).......((((....))))...............))))..... ( -35.70, z-score = -2.95, R) >droYak2.chr2R 6263042 82 - 21139217 ---GAACCACAAACCCGCUGCGAUCGCAUGGGGAGGGGAAUUUAUGUGGAACGCGGAGGGGCAAGAACUGAAAGCUCAGCUGGAA------------------ ---...(((....(((.(((((.(((((((((........)))))))))..))))).))).......((((....)))).)))..------------------ ( -25.40, z-score = -1.43, R) >droEre2.scaffold_4845 8518531 81 + 22589142 ---GAACCACAAACCCGCUGCGAUCGCAUGGGGAGGGGAAUUUAUGUGGAACGCGGAGGGGCAAGAACUGAAAGCUCAGCUGAA------------------- ---..........(((.(((((.(((((((((........)))))))))..))))).))).......((((....)))).....------------------- ( -22.90, z-score = -0.75, R) >consensus GAACCACCACAAACCCGCUGCGAUCGCAUGGGGAGGGGAAUUUAUGUGGAACGCGGCGGGCCAAGAACUGAAAGCUCAGCAAAGAACGAUC_AAGUGGCU_A_ .............(((((((((.(((((((((........)))))))))..))))))))).......((((....))))........................ (-24.60 = -25.04 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:01 2011