| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,301,173 – 14,301,263 |
| Length | 90 |
| Max. P | 0.755395 |
| Location | 14,301,173 – 14,301,263 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 69.52 |
| Shannon entropy | 0.52601 |
| G+C content | 0.49838 |
| Mean single sequence MFE | -21.14 |
| Consensus MFE | -8.62 |
| Energy contribution | -8.70 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.755395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14301173 90 + 21146708 UCUCGCUCUCUCCUCUCCCUGUUCCU------GUCGCUCUCGUGCUCUUG---UCUCUGUAUUUGACACAUUUUUCAUGAGCACAAACAGAUUCGUCGU ..................(((((..(------((.((((.........((---((.........))))..........))))))))))))......... ( -14.01, z-score = -0.93, R) >droYak2.chr2R 6253955 99 - 21139217 UGUCGUUCUCUCCUCUCACUGUUCCUAUCCCUGUCGCUCUCGCGCUCUUCAUUUCUCUUCAUUUGACACAUUUUUCAUGAGCGCCCACAGGGGCGUCGA ...........................(((((((.(.....((((((...........((....))............))))))).)))))))...... ( -18.10, z-score = -0.56, R) >droSec1.super_1 11778183 90 + 14215200 UCUCGCUCUCUCCUCUCAGAGUUCCU------GUCGCUCUCGUGCUCUUG---UCUCUGUAUUUGACACAUUUUUCAUGAGUACCGACAGGGGCGUCGU ...((((((((......))))..(((------((((..((((((....((---(.((.......)).))).....))))))...))))))))))).... ( -27.90, z-score = -2.81, R) >droSim1.chr2R 13038006 90 + 19596830 UCUCGCUCUCUCCUCUCCCAGUUCCU------GUCGCUCUCGUGCUCUUG---UCUCUGUAUUUGACACAUUUUUCAUGAGCACCGACAGGGGCGUCGA ....................((((((------((((..((((((....((---(.((.......)).))).....))))))...))))))))))..... ( -26.20, z-score = -2.52, R) >droVir3.scaffold_12875 638179 88 - 20611582 --UAGACUCCCUCUCCCUCUCUCGCU------UGCUCGCUUACAUUUAGCGUGUUUCUUCUUUUGACACAUUUUU-AUACGCUUAUGCGUGUGGAGC-- --........................------.(((((((.......)))(((((.........))))).....(-((((((....)))))))))))-- ( -19.50, z-score = -2.45, R) >consensus UCUCGCUCUCUCCUCUCACUGUUCCU______GUCGCUCUCGUGCUCUUG___UCUCUGUAUUUGACACAUUUUUCAUGAGCACCGACAGGGGCGUCGA ................................(.((((((.((((((...............................)))))).....)))))).).. ( -8.62 = -8.70 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:32:00 2011