| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,289,447 – 14,289,503 |
| Length | 56 |
| Max. P | 0.998568 |
| Location | 14,289,447 – 14,289,503 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 89.79 |
| Shannon entropy | 0.16947 |
| G+C content | 0.48854 |
| Mean single sequence MFE | -22.95 |
| Consensus MFE | -20.33 |
| Energy contribution | -20.20 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.86 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.40 |
| SVM RNA-class probability | 0.998568 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14289447 56 - 21146708 ACUGGGAAGCUCUCUUAAAUUAAGAGAGUUUCGCUGUGCUGUAAUGACUCGGCCAG .....((((((((((((...)))))))))))).(((.((((........))))))) ( -21.90, z-score = -3.80, R) >droSim1.chr2R 13010220 53 - 19596830 --UGGGGAGCUCUCUUAAAUUAAGAGAGUUUCGCUGUGCUGUAAUGACUCGGCAG- --.(.((((((((((((...)))))))))))).)..(((((........))))).- ( -21.30, z-score = -3.82, R) >droYak2.chr2R 6240271 55 + 21139217 GCUGGGGAGCUCUCUUAAGCUAAGAGAGUUUCGCUGUGCUGUAAUGACACGGCAG- .....((((((((((((...))))))))))))(((((((......).))))))..- ( -24.10, z-score = -3.41, R) >droEre2.scaffold_4845 8497068 55 - 22589142 GCUGGGGAGCUCUCUUAAAUUAAGAGAGUUUUGCUGUGCUGUAAUGACCCGGCAG- (((((((((((((((((...)))))))))))(((......)))....))))))..- ( -24.50, z-score = -4.41, R) >consensus GCUGGGGAGCUCUCUUAAAUUAAGAGAGUUUCGCUGUGCUGUAAUGACUCGGCAG_ ...(.((((((((((((...)))))))))))).)..(((((........))))).. (-20.33 = -20.20 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:59 2011