| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,279,150 – 14,279,202 |
| Length | 52 |
| Max. P | 0.923742 |
| Location | 14,279,150 – 14,279,202 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 94.47 |
| Shannon entropy | 0.09867 |
| G+C content | 0.41537 |
| Mean single sequence MFE | -15.06 |
| Consensus MFE | -14.00 |
| Energy contribution | -13.76 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14279150 52 + 21146708 CAAAUGAGCGUACACAUGUACGUAUACGUAAUAUGUG-AAAAUGUGCGCCUCU .....(((((((((....(((((((.....)))))))-....)))))).))). ( -16.20, z-score = -2.98, R) >droEre2.scaffold_4845 8485029 51 + 22589142 CAAAUGAGCGUACACAUGUGCGUAUACGUAAUAUGUG-AAAAUGUGCGCCCU- .......(((((((....(((((((.....)))))))-....)))))))...- ( -14.30, z-score = -1.88, R) >droYak2.chr2R 6229861 53 - 21139217 CAAAUGAGCGUACACAUGUGCGUAUACGUAAUAUGUGUGAAAUGUGCGCCUGU .......(((((((((((((((....))).)))))))).......)))).... ( -14.21, z-score = -0.51, R) >droSec1.super_1 11754263 52 + 14215200 CAAAUGAGCGUACACAUGUACGUAUACGUAAUAUGUG-AAAAUGUGCGCCUGU .......(((((((....(((((((.....)))))))-....))))))).... ( -15.30, z-score = -2.04, R) >droSim1.chr2R 13000518 52 + 19596830 CAAAUGAGCGUACACAUGUACGUAUACGUAAUAUGUG-AAAAUGUGCGCCUGU .......(((((((....(((((((.....)))))))-....))))))).... ( -15.30, z-score = -2.04, R) >consensus CAAAUGAGCGUACACAUGUACGUAUACGUAAUAUGUG_AAAAUGUGCGCCUGU .......(((((((....(((((((.....))))))).....))))))).... (-14.00 = -13.76 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:59 2011