| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,264,391 – 14,264,449 |
| Length | 58 |
| Max. P | 0.765242 |
| Location | 14,264,391 – 14,264,449 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 93.79 |
| Shannon entropy | 0.11337 |
| G+C content | 0.56207 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -19.80 |
| Energy contribution | -19.88 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.765242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14264391 58 - 21146708 GACCCACUGAGAGCCACCUUUUCCCAGUGGUUCAGUGGGUGGCACAAAUGAUAUGGGG .(((((((((..(((((.........)))))))))))))).................. ( -21.20, z-score = -1.26, R) >droSim1.chr2R 12985142 58 - 19596830 GACCCACUGAGAGCCACCUUUUCCCAGUGGUUCAGUGGGUGGCACAAAUGAUAUGGUG .(((((((((..(((((.........)))))))))))))).................. ( -21.20, z-score = -1.80, R) >droSec1.super_1 11739366 58 - 14215200 GACCCACUGAGAGCCACCUUUUCCCAGUGGUUGAGUGGGUGGCACAAAUGACAUGGGG ..((((.((...(((((((.(((((...))..))).))))))).(....).)))))). ( -19.10, z-score = -0.36, R) >droYak2.chr2R 6208514 58 + 21139217 GACCCGCUGAGAGCCACGUUUUCCCAGUGGUUCAGUGGGUGGCACAAAUGAAAUGGGG .(((((((((..(((((.........)))))))))))))).................. ( -22.00, z-score = -1.73, R) >droEre2.scaffold_4845 8470851 58 - 22589142 GACCCACUGAGAGCCACCUUUUCCCAGUGGCUCACUGGGUGGCACAAACGAAAUGGGG ..((((......((((......(((((((...))))))))))).(....)...)))). ( -18.90, z-score = -0.65, R) >consensus GACCCACUGAGAGCCACCUUUUCCCAGUGGUUCAGUGGGUGGCACAAAUGAAAUGGGG .(((((((((..(((((.........)))))))))))))).................. (-19.80 = -19.88 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:58 2011